Hb_001136_090

Information

Type -
Description -
Location Contig1136: 84253-88805
Sequence    

Annotation

kegg
ID rcu:RCOM_0353730
description Protein PNS1, putative
nr
ID XP_002529146.1
description Protein PNS1, putative [Ricinus communis]
swissprot
ID Q869R1
description CTL-like protein DDB_G0274487 OS=Dictyostelium discoideum GN=DDB_G0274487 PE=3 SV=1
trembl
ID B9ST27
description Protein PNS1, putative OS=Ricinus communis GN=RCOM_0353730 PE=4 SV=1
Gene Ontology
ID GO:0016021
description ctl-like protein ddb_g0274487

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04076: 84117-84979
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001136_090 0.0 - - Protein PNS1, putative [Ricinus communis]
2 Hb_000041_280 0.0737912695 - - PREDICTED: probable protein arginine N-methyltransferase 6 [Jatropha curcas]
3 Hb_001136_100 0.0878477087 - - hypothetical protein MTR_085s0013 [Medicago truncatula]
4 Hb_002367_130 0.0929816728 - - UNC-50 family protein isoform 1 [Theobroma cacao]
5 Hb_012132_030 0.093962689 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
6 Hb_001502_060 0.0947699231 - - DNA mismatch repair protein MSH2, putative [Ricinus communis]
7 Hb_000072_350 0.0956367094 - - PREDICTED: WPP domain-interacting tail-anchored protein 1 [Jatropha curcas]
8 Hb_010710_080 0.0971153864 - - -
9 Hb_048476_170 0.101636093 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Citrus sinensis]
10 Hb_000946_120 0.1034488031 - - DNA binding protein, putative [Ricinus communis]
11 Hb_007304_110 0.1059899043 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
12 Hb_000320_200 0.1070569632 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
13 Hb_126643_010 0.1097166094 - - Protein transport protein Sec24C, putative [Ricinus communis]
14 Hb_003952_150 0.1107196761 - - PREDICTED: cactin [Jatropha curcas]
15 Hb_004209_020 0.1113975009 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
16 Hb_001493_030 0.1114023236 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
17 Hb_000529_260 0.112255885 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
18 Hb_000358_150 0.1124007103 - - hypothetical protein VITISV_012309 [Vitis vinifera]
19 Hb_011512_060 0.113581137 - - PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
20 Hb_000920_210 0.1137080142 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]

Gene co-expression network

sample Hb_001136_090 Hb_001136_090 Hb_000041_280 Hb_000041_280 Hb_001136_090--Hb_000041_280 Hb_001136_100 Hb_001136_100 Hb_001136_090--Hb_001136_100 Hb_002367_130 Hb_002367_130 Hb_001136_090--Hb_002367_130 Hb_012132_030 Hb_012132_030 Hb_001136_090--Hb_012132_030 Hb_001502_060 Hb_001502_060 Hb_001136_090--Hb_001502_060 Hb_000072_350 Hb_000072_350 Hb_001136_090--Hb_000072_350 Hb_001493_030 Hb_001493_030 Hb_000041_280--Hb_001493_030 Hb_000463_140 Hb_000463_140 Hb_000041_280--Hb_000463_140 Hb_009627_010 Hb_009627_010 Hb_000041_280--Hb_009627_010 Hb_003052_150 Hb_003052_150 Hb_000041_280--Hb_003052_150 Hb_000574_440 Hb_000574_440 Hb_000041_280--Hb_000574_440 Hb_001136_100--Hb_002367_130 Hb_001136_100--Hb_012132_030 Hb_003001_150 Hb_003001_150 Hb_001136_100--Hb_003001_150 Hb_007304_110 Hb_007304_110 Hb_001136_100--Hb_007304_110 Hb_000207_310 Hb_000207_310 Hb_001136_100--Hb_000207_310 Hb_000116_180 Hb_000116_180 Hb_002367_130--Hb_000116_180 Hb_001828_160 Hb_001828_160 Hb_002367_130--Hb_001828_160 Hb_002367_130--Hb_000207_310 Hb_003018_130 Hb_003018_130 Hb_002367_130--Hb_003018_130 Hb_021422_010 Hb_021422_010 Hb_002367_130--Hb_021422_010 Hb_001369_420 Hb_001369_420 Hb_002367_130--Hb_001369_420 Hb_000946_120 Hb_000946_120 Hb_012132_030--Hb_000946_120 Hb_017168_010 Hb_017168_010 Hb_012132_030--Hb_017168_010 Hb_010222_080 Hb_010222_080 Hb_012132_030--Hb_010222_080 Hb_001541_260 Hb_001541_260 Hb_012132_030--Hb_001541_260 Hb_144787_030 Hb_144787_030 Hb_012132_030--Hb_144787_030 Hb_001502_060--Hb_000072_350 Hb_007520_030 Hb_007520_030 Hb_001502_060--Hb_007520_030 Hb_000529_260 Hb_000529_260 Hb_001502_060--Hb_000529_260 Hb_002477_130 Hb_002477_130 Hb_001502_060--Hb_002477_130 Hb_000424_010 Hb_000424_010 Hb_001502_060--Hb_000424_010 Hb_004128_050 Hb_004128_050 Hb_001502_060--Hb_004128_050 Hb_000743_040 Hb_000743_040 Hb_000072_350--Hb_000743_040 Hb_000320_200 Hb_000320_200 Hb_000072_350--Hb_000320_200 Hb_000072_350--Hb_000529_260 Hb_003952_150 Hb_003952_150 Hb_000072_350--Hb_003952_150 Hb_000329_090 Hb_000329_090 Hb_000072_350--Hb_000329_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.99785 3.74461 2.7586 2.23689 12.3182 5.5363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.55372 3.59418 5.26593 5.75581 3.75753

CAGE analysis