Hb_001136_140

Information

Type -
Description -
Location Contig1136: 133371-134187
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13790g
description POPTRDRAFT_225606; hypothetical protein
nr
ID XP_002314879.2
description hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
swissprot
ID P0CW98
description Protein PLANT CADMIUM RESISTANCE 9 OS=Arabidopsis thaliana GN=PCR9 PE=3 SV=1
trembl
ID B9HWK5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s13790g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001136_140 0.0 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
2 Hb_004944_030 0.0008528807 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
3 Hb_072149_010 0.002551215 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
4 Hb_002400_110 0.002793345 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001100_020 0.0079745796 - - -
6 Hb_010452_030 0.0092925224 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
7 Hb_000045_270 0.0119847038 - - conserved hypothetical protein [Ricinus communis]
8 Hb_187024_020 0.0172154372 - - PREDICTED: uncharacterized protein LOC102598429 [Solanum tuberosum]
9 Hb_122911_010 0.0176709491 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
10 Hb_002342_040 0.0248729479 - - FERONIA, partial [Arabis alpina]
11 Hb_000002_160 0.0258828286 - - Uncharacterized protein TCM_021030 [Theobroma cacao]
12 Hb_080293_010 0.0302230327 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Nelumbo nucifera]
13 Hb_188168_010 0.0315649543 - - Arylacetamide deacetylase, putative [Ricinus communis]
14 Hb_039814_010 0.0343273496 - - hypothetical protein JCGZ_05023 [Jatropha curcas]
15 Hb_001659_030 0.0349636445 - - -
16 Hb_005426_010 0.0352547903 - - polyprotein [Oryza australiensis]
17 Hb_007592_010 0.0354088866 - - PREDICTED: uncharacterized protein LOC105118874 [Populus euphratica]
18 Hb_003344_020 0.0364161913 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501197 [Cucumis melo]
19 Hb_008092_010 0.0375541107 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
20 Hb_003702_020 0.0379976797 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]

Gene co-expression network

sample Hb_001136_140 Hb_001136_140 Hb_004944_030 Hb_004944_030 Hb_001136_140--Hb_004944_030 Hb_072149_010 Hb_072149_010 Hb_001136_140--Hb_072149_010 Hb_002400_110 Hb_002400_110 Hb_001136_140--Hb_002400_110 Hb_001100_020 Hb_001100_020 Hb_001136_140--Hb_001100_020 Hb_010452_030 Hb_010452_030 Hb_001136_140--Hb_010452_030 Hb_000045_270 Hb_000045_270 Hb_001136_140--Hb_000045_270 Hb_004944_030--Hb_072149_010 Hb_004944_030--Hb_002400_110 Hb_004944_030--Hb_001100_020 Hb_004944_030--Hb_010452_030 Hb_004944_030--Hb_000045_270 Hb_072149_010--Hb_002400_110 Hb_072149_010--Hb_001100_020 Hb_072149_010--Hb_010452_030 Hb_072149_010--Hb_000045_270 Hb_002400_110--Hb_001100_020 Hb_002400_110--Hb_010452_030 Hb_002400_110--Hb_000045_270 Hb_001100_020--Hb_010452_030 Hb_001100_020--Hb_000045_270 Hb_010452_030--Hb_000045_270 Hb_122911_010 Hb_122911_010 Hb_010452_030--Hb_122911_010 Hb_000045_270--Hb_122911_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.649747 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.232892 0

CAGE analysis