Hb_001138_010

Information

Type -
Description -
Location Contig1138: 7238-8401
Sequence    

Annotation

kegg
ID rcu:RCOM_0811600
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002518690.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q00874
description DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2
trembl
ID B9RYA6
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0811600 PE=4 SV=1
Gene Ontology
ID GO:0016301
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001138_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000252_090 0.110697654 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
3 Hb_001916_120 0.1246850241 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
4 Hb_000605_010 0.1458873667 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
5 Hb_001677_050 0.1687791399 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
6 Hb_000156_030 0.1896016124 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003540_140 0.191626663 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
8 Hb_000329_540 0.1920113611 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
9 Hb_000329_420 0.1928523876 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
10 Hb_001277_410 0.19453516 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
11 Hb_000441_230 0.194811561 - - unnamed protein product [Coffea canephora]
12 Hb_073212_010 0.1962923144 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
13 Hb_000056_120 0.200904507 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
14 Hb_001935_190 0.2021283485 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
15 Hb_000365_260 0.2052288603 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000878_040 0.2065767802 - - PREDICTED: uncharacterized protein LOC105635780 isoform X1 [Jatropha curcas]
17 Hb_002234_220 0.2082812032 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 [Jatropha curcas]
18 Hb_004307_040 0.2092246434 - - -
19 Hb_128496_010 0.2134344698 - - unnamed protein product [Vitis vinifera]
20 Hb_010189_010 0.2138384215 - - -

Gene co-expression network

sample Hb_001138_010 Hb_001138_010 Hb_000252_090 Hb_000252_090 Hb_001138_010--Hb_000252_090 Hb_001916_120 Hb_001916_120 Hb_001138_010--Hb_001916_120 Hb_000605_010 Hb_000605_010 Hb_001138_010--Hb_000605_010 Hb_001677_050 Hb_001677_050 Hb_001138_010--Hb_001677_050 Hb_000156_030 Hb_000156_030 Hb_001138_010--Hb_000156_030 Hb_003540_140 Hb_003540_140 Hb_001138_010--Hb_003540_140 Hb_000252_090--Hb_001916_120 Hb_000329_540 Hb_000329_540 Hb_000252_090--Hb_000329_540 Hb_000329_420 Hb_000329_420 Hb_000252_090--Hb_000329_420 Hb_000252_090--Hb_000156_030 Hb_000441_230 Hb_000441_230 Hb_000252_090--Hb_000441_230 Hb_001277_410 Hb_001277_410 Hb_001916_120--Hb_001277_410 Hb_000365_260 Hb_000365_260 Hb_001916_120--Hb_000365_260 Hb_004324_240 Hb_004324_240 Hb_001916_120--Hb_004324_240 Hb_018954_020 Hb_018954_020 Hb_001916_120--Hb_018954_020 Hb_073212_010 Hb_073212_010 Hb_000605_010--Hb_073212_010 Hb_002234_220 Hb_002234_220 Hb_000605_010--Hb_002234_220 Hb_000605_010--Hb_001677_050 Hb_000879_050 Hb_000879_050 Hb_000605_010--Hb_000879_050 Hb_088542_010 Hb_088542_010 Hb_000605_010--Hb_088542_010 Hb_001632_010 Hb_001632_010 Hb_001677_050--Hb_001632_010 Hb_001677_050--Hb_088542_010 Hb_004007_150 Hb_004007_150 Hb_001677_050--Hb_004007_150 Hb_001677_050--Hb_073212_010 Hb_000156_030--Hb_003540_140 Hb_000156_030--Hb_000329_540 Hb_000161_100 Hb_000161_100 Hb_000156_030--Hb_000161_100 Hb_004032_460 Hb_004032_460 Hb_000156_030--Hb_004032_460 Hb_000156_030--Hb_000441_230 Hb_002897_040 Hb_002897_040 Hb_000156_030--Hb_002897_040 Hb_002769_040 Hb_002769_040 Hb_003540_140--Hb_002769_040 Hb_003540_140--Hb_000441_230 Hb_003540_140--Hb_000329_540 Hb_061256_030 Hb_061256_030 Hb_003540_140--Hb_061256_030 Hb_003226_170 Hb_003226_170 Hb_003540_140--Hb_003226_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
319.489 23.4094 16.0746 45.0565 116.351 224.829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.7237 5.49473 13.0949 8.86269 17.9852

CAGE analysis