Hb_001140_030

Information

Type -
Description -
Location Contig1140: 97440-103652
Sequence    

Annotation

kegg
ID rcu:RCOM_1496670
description ankyrin repeat-containing protein, putative
nr
ID XP_012090289.1
description PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
swissprot
ID Q4FE45
description E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana GN=XBAT33 PE=2 SV=1
trembl
ID A0A067JRZ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26140 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase xbat33-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04171: 97534-103601 , PASA_asmbl_04172: 97525-103582
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_030 0.0 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
2 Hb_001952_120 0.057552329 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
3 Hb_010998_040 0.062716695 transcription factor TF Family: MYB myb3r3, putative [Ricinus communis]
4 Hb_032264_060 0.0668190619 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
5 Hb_004631_190 0.0699857195 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
6 Hb_005965_030 0.0703095098 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
7 Hb_001405_190 0.0712786685 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
8 Hb_000679_340 0.0738033457 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
9 Hb_000718_070 0.0756336374 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010362_030 0.0776107103 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
11 Hb_001804_110 0.0778357104 - - hypothetical protein CISIN_1g031200mg [Citrus sinensis]
12 Hb_000922_020 0.0783571568 - - protein binding protein, putative [Ricinus communis]
13 Hb_006688_050 0.0787234548 - - PREDICTED: cytochrome c oxidase assembly protein COX15 isoform X1 [Jatropha curcas]
14 Hb_000230_090 0.0805310851 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
15 Hb_001636_050 0.080545495 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
16 Hb_002078_110 0.0808980233 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
17 Hb_001077_030 0.0815605209 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
18 Hb_000230_430 0.0822015023 - - catalytic, putative [Ricinus communis]
19 Hb_002701_150 0.0830150627 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
20 Hb_004912_030 0.0839840328 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]

Gene co-expression network

sample Hb_001140_030 Hb_001140_030 Hb_001952_120 Hb_001952_120 Hb_001140_030--Hb_001952_120 Hb_010998_040 Hb_010998_040 Hb_001140_030--Hb_010998_040 Hb_032264_060 Hb_032264_060 Hb_001140_030--Hb_032264_060 Hb_004631_190 Hb_004631_190 Hb_001140_030--Hb_004631_190 Hb_005965_030 Hb_005965_030 Hb_001140_030--Hb_005965_030 Hb_001405_190 Hb_001405_190 Hb_001140_030--Hb_001405_190 Hb_001952_120--Hb_005965_030 Hb_000922_020 Hb_000922_020 Hb_001952_120--Hb_000922_020 Hb_001636_050 Hb_001636_050 Hb_001952_120--Hb_001636_050 Hb_001952_120--Hb_010998_040 Hb_002027_060 Hb_002027_060 Hb_001952_120--Hb_002027_060 Hb_001804_110 Hb_001804_110 Hb_010998_040--Hb_001804_110 Hb_000959_230 Hb_000959_230 Hb_010998_040--Hb_000959_230 Hb_010362_030 Hb_010362_030 Hb_010998_040--Hb_010362_030 Hb_000139_190 Hb_000139_190 Hb_010998_040--Hb_000139_190 Hb_000130_420 Hb_000130_420 Hb_010998_040--Hb_000130_420 Hb_000803_070 Hb_000803_070 Hb_032264_060--Hb_000803_070 Hb_003633_070 Hb_003633_070 Hb_032264_060--Hb_003633_070 Hb_003927_040 Hb_003927_040 Hb_032264_060--Hb_003927_040 Hb_001751_140 Hb_001751_140 Hb_032264_060--Hb_001751_140 Hb_001754_030 Hb_001754_030 Hb_032264_060--Hb_001754_030 Hb_004631_190--Hb_001405_190 Hb_009112_010 Hb_009112_010 Hb_004631_190--Hb_009112_010 Hb_000230_430 Hb_000230_430 Hb_004631_190--Hb_000230_430 Hb_000718_070 Hb_000718_070 Hb_004631_190--Hb_000718_070 Hb_000661_020 Hb_000661_020 Hb_004631_190--Hb_000661_020 Hb_000160_350 Hb_000160_350 Hb_005965_030--Hb_000160_350 Hb_002157_260 Hb_002157_260 Hb_005965_030--Hb_002157_260 Hb_004785_100 Hb_004785_100 Hb_005965_030--Hb_004785_100 Hb_000679_340 Hb_000679_340 Hb_005965_030--Hb_000679_340 Hb_003638_090 Hb_003638_090 Hb_005965_030--Hb_003638_090 Hb_022256_060 Hb_022256_060 Hb_005965_030--Hb_022256_060 Hb_002615_120 Hb_002615_120 Hb_001405_190--Hb_002615_120 Hb_143766_110 Hb_143766_110 Hb_001405_190--Hb_143766_110 Hb_007929_080 Hb_007929_080 Hb_001405_190--Hb_007929_080 Hb_001405_190--Hb_000922_020 Hb_001405_190--Hb_010362_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5414 16.2422 15.8206 9.23759 18.6806 11.7292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.4111 8.59985 7.76268 7.58575 8.22309

CAGE analysis