Hb_001140_080

Information

Type -
Description -
Location Contig1140: 142829-145228
Sequence    

Annotation

kegg
ID rcu:RCOM_1496460
description steroid binding protein, putative (EC:1.3.1.74)
nr
ID XP_012090276.1
description PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
swissprot
ID Q9M2Z4
description Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1
trembl
ID A0A067JHP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26129 PE=4 SV=1
Gene Ontology
ID GO:0005634
description membrane steroid-binding protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04182: 142795-145121
cDNA
(Sanger)
(ID:Location)		 001_H22.ab1: 143069-145033 , 002_F06.ab1: 143030-144987 , 005_C23.ab1: 143065-144996 , 005_M07.ab1: 143203-145127 , 009_L19.ab1: 143032-144985 , 018_E15.ab1: 143213-145121 , 021_F06.ab1: 143116-145033 , 021_K20.ab1: 143053-144991 , 022_J09.ab1: 143229-144987 , 026_E02.ab1: 143236-145064 , 031_L01.ab1: 143232-145127 , 035_A08.ab1: 143032-144990 , 036_A03.ab1: 143066-145033 , 036_M02.ab1: 143015-144987 , 037_P10.ab1: 143014-145001 , 041_G17.ab1: 143228-144850 , 043_I08.ab1: 143037-144991 , 045_A15.ab1: 143139-145121 , 045_G21.ab1: 143091-145121 , 045_H13.ab1: 143086-145121 , 047_A06.ab1: 143032-144987 , 049_N13.ab1: 143319-144996

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_080 0.0 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
2 Hb_000282_150 0.0729962114 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
3 Hb_012807_120 0.0736379027 - - metal ion binding protein, putative [Ricinus communis]
4 Hb_000270_450 0.0736822428 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
5 Hb_006478_070 0.07696809 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
6 Hb_003506_040 0.0805465638 - - hypothetical protein PHAVU_009G052500g [Phaseolus vulgaris]
7 Hb_005028_010 0.0843031564 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
8 Hb_000320_440 0.0884073406 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
9 Hb_025048_040 0.0903661292 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
10 Hb_001776_080 0.093966908 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
11 Hb_001009_050 0.097471622 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
12 Hb_000365_350 0.0980424389 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
13 Hb_003050_090 0.100237416 - - lupus la ribonucleoprotein, putative [Ricinus communis]
14 Hb_160818_010 0.1002636201 - - -
15 Hb_004232_010 0.1050901531 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
16 Hb_003734_130 0.1051728301 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
17 Hb_000640_210 0.1062519002 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
18 Hb_002025_140 0.1063016885 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
19 Hb_000573_040 0.1065711222 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
20 Hb_000500_290 0.1069577903 - - bromodomain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001140_080 Hb_001140_080 Hb_000282_150 Hb_000282_150 Hb_001140_080--Hb_000282_150 Hb_012807_120 Hb_012807_120 Hb_001140_080--Hb_012807_120 Hb_000270_450 Hb_000270_450 Hb_001140_080--Hb_000270_450 Hb_006478_070 Hb_006478_070 Hb_001140_080--Hb_006478_070 Hb_003506_040 Hb_003506_040 Hb_001140_080--Hb_003506_040 Hb_005028_010 Hb_005028_010 Hb_001140_080--Hb_005028_010 Hb_000500_290 Hb_000500_290 Hb_000282_150--Hb_000500_290 Hb_011537_040 Hb_011537_040 Hb_000282_150--Hb_011537_040 Hb_000282_150--Hb_000270_450 Hb_000282_150--Hb_012807_120 Hb_004232_010 Hb_004232_010 Hb_000282_150--Hb_004232_010 Hb_012807_120--Hb_006478_070 Hb_000365_350 Hb_000365_350 Hb_012807_120--Hb_000365_350 Hb_000320_440 Hb_000320_440 Hb_012807_120--Hb_000320_440 Hb_000088_180 Hb_000088_180 Hb_012807_120--Hb_000088_180 Hb_000573_040 Hb_000573_040 Hb_012807_120--Hb_000573_040 Hb_001009_050 Hb_001009_050 Hb_000270_450--Hb_001009_050 Hb_025048_040 Hb_025048_040 Hb_000270_450--Hb_025048_040 Hb_009615_110 Hb_009615_110 Hb_000270_450--Hb_009615_110 Hb_005016_030 Hb_005016_030 Hb_000270_450--Hb_005016_030 Hb_000270_450--Hb_000320_440 Hb_006478_070--Hb_003506_040 Hb_006478_070--Hb_000320_440 Hb_000172_530 Hb_000172_530 Hb_006478_070--Hb_000172_530 Hb_001846_080 Hb_001846_080 Hb_006478_070--Hb_001846_080 Hb_001776_080 Hb_001776_080 Hb_003506_040--Hb_001776_080 Hb_003506_040--Hb_012807_120 Hb_000300_540 Hb_000300_540 Hb_003506_040--Hb_000300_540 Hb_160818_010 Hb_160818_010 Hb_003506_040--Hb_160818_010 Hb_012760_200 Hb_012760_200 Hb_005028_010--Hb_012760_200 Hb_000212_280 Hb_000212_280 Hb_005028_010--Hb_000212_280 Hb_000640_210 Hb_000640_210 Hb_005028_010--Hb_000640_210 Hb_005028_010--Hb_000573_040 Hb_005028_010--Hb_025048_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3872.75 677.281 154.999 262.838 2835.45 3144.34
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1781.2 599.819 690.156 623.625 84.9341

CAGE analysis