Hb_001140_090

Information

Type -
Description -
Location Contig1140: 147272-151219
Sequence    

Annotation

kegg
ID rcu:RCOM_1496440
description hypothetical protein
nr
ID XP_002510806.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9M2Z5
description F-box/LRR-repeat protein At3g48880 OS=Arabidopsis thaliana GN=At3g48880 PE=2 SV=1
trembl
ID B9R9D1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1496440 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box lrr-repeat protein at3g48880

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04185: 147273-155425
cDNA
(Sanger)
(ID:Location)		 027_O13.ab1: 147970-155425 , 038_L15.ab1: 147865-155427

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007839_020 0.0793246003 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000156_090 0.0848857276 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
4 Hb_001328_080 0.0863877136 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
5 Hb_026198_010 0.0875028892 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
6 Hb_002965_050 0.0896980687 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
7 Hb_026198_060 0.0902941993 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
8 Hb_060094_010 0.093660208 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
9 Hb_004994_240 0.0941353401 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
10 Hb_001366_090 0.0944371698 transcription factor TF Family: NAC hypothetical protein RCOM_1341380 [Ricinus communis]
11 Hb_002203_030 0.0950175656 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
12 Hb_001329_200 0.095729453 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
13 Hb_003018_030 0.0969781043 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
14 Hb_010287_020 0.0989615429 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
15 Hb_001699_010 0.0990340271 - - drought-inducible protein [Manihot esculenta]
16 Hb_008725_050 0.0995548342 - - syntaxin, putative [Ricinus communis]
17 Hb_005288_140 0.1002938295 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
18 Hb_002232_480 0.1009766889 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
19 Hb_000649_250 0.1016064633 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
20 Hb_006573_040 0.1023498195 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001140_090 Hb_001140_090 Hb_007839_020 Hb_007839_020 Hb_001140_090--Hb_007839_020 Hb_000156_090 Hb_000156_090 Hb_001140_090--Hb_000156_090 Hb_001328_080 Hb_001328_080 Hb_001140_090--Hb_001328_080 Hb_026198_010 Hb_026198_010 Hb_001140_090--Hb_026198_010 Hb_002965_050 Hb_002965_050 Hb_001140_090--Hb_002965_050 Hb_026198_060 Hb_026198_060 Hb_001140_090--Hb_026198_060 Hb_010407_080 Hb_010407_080 Hb_007839_020--Hb_010407_080 Hb_011360_050 Hb_011360_050 Hb_007839_020--Hb_011360_050 Hb_001329_200 Hb_001329_200 Hb_007839_020--Hb_001329_200 Hb_007839_020--Hb_001328_080 Hb_001408_110 Hb_001408_110 Hb_007839_020--Hb_001408_110 Hb_022425_060 Hb_022425_060 Hb_007839_020--Hb_022425_060 Hb_000156_090--Hb_002965_050 Hb_003018_030 Hb_003018_030 Hb_000156_090--Hb_003018_030 Hb_002900_120 Hb_002900_120 Hb_000156_090--Hb_002900_120 Hb_003428_090 Hb_003428_090 Hb_000156_090--Hb_003428_090 Hb_008725_050 Hb_008725_050 Hb_000156_090--Hb_008725_050 Hb_000638_280 Hb_000638_280 Hb_000156_090--Hb_000638_280 Hb_001328_080--Hb_001329_200 Hb_002915_060 Hb_002915_060 Hb_001328_080--Hb_002915_060 Hb_006006_040 Hb_006006_040 Hb_001328_080--Hb_006006_040 Hb_023344_150 Hb_023344_150 Hb_001328_080--Hb_023344_150 Hb_000926_260 Hb_000926_260 Hb_001328_080--Hb_000926_260 Hb_000120_810 Hb_000120_810 Hb_026198_010--Hb_000120_810 Hb_026198_010--Hb_000926_260 Hb_003687_120 Hb_003687_120 Hb_026198_010--Hb_003687_120 Hb_006637_030 Hb_006637_030 Hb_026198_010--Hb_006637_030 Hb_002693_030 Hb_002693_030 Hb_026198_010--Hb_002693_030 Hb_002876_210 Hb_002876_210 Hb_002965_050--Hb_002876_210 Hb_002965_050--Hb_002900_120 Hb_060094_010 Hb_060094_010 Hb_002965_050--Hb_060094_010 Hb_000815_310 Hb_000815_310 Hb_002965_050--Hb_000815_310 Hb_000711_010 Hb_000711_010 Hb_002965_050--Hb_000711_010 Hb_005288_140 Hb_005288_140 Hb_026198_060--Hb_005288_140 Hb_000649_250 Hb_000649_250 Hb_026198_060--Hb_000649_250 Hb_026198_060--Hb_022425_060 Hb_001257_100 Hb_001257_100 Hb_026198_060--Hb_001257_100 Hb_004517_020 Hb_004517_020 Hb_026198_060--Hb_004517_020 Hb_001259_120 Hb_001259_120 Hb_026198_060--Hb_001259_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.3186 85.6487 76.2363 70.6926 16.1634 25.9907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.7765 30.9177 38.9148 49.8554 39.5248

CAGE analysis