Hb_001140_110

Information

Type -
Description -
Location Contig1140: 165895-167064
Sequence    

Annotation

kegg
ID rcu:RCOM_0395760
description ubiquitin ligase protein cop1, putative (EC:1.3.1.74)
nr
ID KDP22292.1
description hypothetical protein JCGZ_26123 [Jatropha curcas]
swissprot
ID Q9FFA7
description WD repeat-containing protein RUP2 OS=Arabidopsis thaliana GN=RUP2 PE=1 SV=1
trembl
ID A0A067JEP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26123 PE=4 SV=1
Gene Ontology
ID GO:0005515
description wd repeat-containing protein rup2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04188: 165775-167238
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_110 0.0 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
2 Hb_001951_050 0.0326592612 - - chlorophyll A/B binding protein, putative [Ricinus communis]
3 Hb_003058_150 0.039155604 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
4 Hb_001097_110 0.0409018621 - - gibberellin 20-oxidase, putative [Ricinus communis]
5 Hb_003805_110 0.0453157898 - - PREDICTED: laccase-11-like [Jatropha curcas]
6 Hb_001080_290 0.0474797476 - - PSI reaction center subunit II [Citrus sinensis]
7 Hb_000940_120 0.0531059126 - - PREDICTED: proline-rich protein 4-like isoform X2 [Pyrus x bretschneideri]
8 Hb_007534_080 0.0545243226 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
9 Hb_005474_070 0.0550733975 - - hypothetical protein JCGZ_10579 [Jatropha curcas]
10 Hb_077976_010 0.0564854953 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
11 Hb_042123_010 0.0610843247 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
12 Hb_000504_220 0.0612105828 - - hypothetical protein JCGZ_10249 [Jatropha curcas]
13 Hb_000530_060 0.0620393849 - - -
14 Hb_029584_020 0.0624762277 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004818_010 0.0677556512 - - hypothetical protein JCGZ_13628 [Jatropha curcas]
16 Hb_003093_050 0.0693841082 - - PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]
17 Hb_003647_070 0.0698136309 - - hypothetical protein POPTR_0006s09430g [Populus trichocarpa]
18 Hb_000140_040 0.0717039935 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
19 Hb_004143_080 0.0719450672 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
20 Hb_000815_120 0.0728654723 - - calcium ion binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001140_110 Hb_001140_110 Hb_001951_050 Hb_001951_050 Hb_001140_110--Hb_001951_050 Hb_003058_150 Hb_003058_150 Hb_001140_110--Hb_003058_150 Hb_001097_110 Hb_001097_110 Hb_001140_110--Hb_001097_110 Hb_003805_110 Hb_003805_110 Hb_001140_110--Hb_003805_110 Hb_001080_290 Hb_001080_290 Hb_001140_110--Hb_001080_290 Hb_000940_120 Hb_000940_120 Hb_001140_110--Hb_000940_120 Hb_001951_050--Hb_001080_290 Hb_001951_050--Hb_001097_110 Hb_004143_080 Hb_004143_080 Hb_001951_050--Hb_004143_080 Hb_000815_120 Hb_000815_120 Hb_001951_050--Hb_000815_120 Hb_042123_010 Hb_042123_010 Hb_001951_050--Hb_042123_010 Hb_005474_070 Hb_005474_070 Hb_003058_150--Hb_005474_070 Hb_003058_150--Hb_003805_110 Hb_003058_150--Hb_000940_120 Hb_003647_070 Hb_003647_070 Hb_003058_150--Hb_003647_070 Hb_007534_080 Hb_007534_080 Hb_003058_150--Hb_007534_080 Hb_000140_040 Hb_000140_040 Hb_001097_110--Hb_000140_040 Hb_001097_110--Hb_003805_110 Hb_001097_110--Hb_007534_080 Hb_001097_110--Hb_003058_150 Hb_029584_020 Hb_029584_020 Hb_003805_110--Hb_029584_020 Hb_000530_060 Hb_000530_060 Hb_003805_110--Hb_000530_060 Hb_081344_010 Hb_081344_010 Hb_003805_110--Hb_081344_010 Hb_077976_010 Hb_077976_010 Hb_001080_290--Hb_077976_010 Hb_001775_010 Hb_001775_010 Hb_001080_290--Hb_001775_010 Hb_001080_290--Hb_042123_010 Hb_001080_290--Hb_001097_110 Hb_004197_030 Hb_004197_030 Hb_000940_120--Hb_004197_030 Hb_002042_220 Hb_002042_220 Hb_000940_120--Hb_002042_220 Hb_000940_120--Hb_005474_070 Hb_000940_120--Hb_003647_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.137112 4.88617 8.84036 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0131844 45.6171

CAGE analysis