Hb_001140_200

Information

Type -
Description -
Location Contig1140: 220269-226870
Sequence    

Annotation

kegg
ID rcu:RCOM_1496010
description hypothetical protein
nr
ID XP_012090736.1
description PREDICTED: uncharacterized protein LOC105648845 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JHM8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26114 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04200: 220575-221035
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_200 0.0 - - PREDICTED: uncharacterized protein LOC105648845 [Jatropha curcas]
2 Hb_057183_040 0.0973092837 - - PREDICTED: WPP domain-interacting tail-anchored protein 2 [Jatropha curcas]
3 Hb_001673_120 0.0977674723 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
4 Hb_001823_100 0.0996594945 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera]
5 Hb_001936_050 0.1051369283 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
6 Hb_001981_070 0.1055483987 - - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis]
7 Hb_000028_470 0.1060661115 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
8 Hb_007152_020 0.1065533772 - - PREDICTED: zinc finger CCCH domain-containing protein 62 isoform X2 [Jatropha curcas]
9 Hb_003297_030 0.1087783403 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
10 Hb_000025_480 0.1098281651 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
11 Hb_008453_150 0.1105225913 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
12 Hb_006551_010 0.1114648726 - - electron transporter, putative [Ricinus communis]
13 Hb_000017_120 0.1124791349 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
14 Hb_000771_110 0.1135174247 - - protein phosphatase 2C [Hevea brasiliensis]
15 Hb_001001_160 0.1158999965 - - Phosphatidic acid phosphohydrolase 2 isoform 1 [Theobroma cacao]
16 Hb_012340_030 0.1163732927 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
17 Hb_000784_090 0.1169518137 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
18 Hb_001047_020 0.1171209214 - - -
19 Hb_000173_170 0.1194072461 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
20 Hb_002631_050 0.1195206607 - - membrane associated ring finger 1,8, putative [Ricinus communis]

Gene co-expression network

sample Hb_001140_200 Hb_001140_200 Hb_057183_040 Hb_057183_040 Hb_001140_200--Hb_057183_040 Hb_001673_120 Hb_001673_120 Hb_001140_200--Hb_001673_120 Hb_001823_100 Hb_001823_100 Hb_001140_200--Hb_001823_100 Hb_001936_050 Hb_001936_050 Hb_001140_200--Hb_001936_050 Hb_001981_070 Hb_001981_070 Hb_001140_200--Hb_001981_070 Hb_000028_470 Hb_000028_470 Hb_001140_200--Hb_000028_470 Hb_008453_150 Hb_008453_150 Hb_057183_040--Hb_008453_150 Hb_057183_040--Hb_000028_470 Hb_057183_040--Hb_001823_100 Hb_000120_240 Hb_000120_240 Hb_057183_040--Hb_000120_240 Hb_003060_070 Hb_003060_070 Hb_057183_040--Hb_003060_070 Hb_001673_120--Hb_000028_470 Hb_009404_010 Hb_009404_010 Hb_001673_120--Hb_009404_010 Hb_001673_120--Hb_057183_040 Hb_005754_020 Hb_005754_020 Hb_001673_120--Hb_005754_020 Hb_178968_150 Hb_178968_150 Hb_001673_120--Hb_178968_150 Hb_012340_030 Hb_012340_030 Hb_001823_100--Hb_012340_030 Hb_001609_030 Hb_001609_030 Hb_001823_100--Hb_001609_030 Hb_001274_030 Hb_001274_030 Hb_001823_100--Hb_001274_030 Hb_000165_030 Hb_000165_030 Hb_001823_100--Hb_000165_030 Hb_000017_120 Hb_000017_120 Hb_001823_100--Hb_000017_120 Hb_007152_020 Hb_007152_020 Hb_001823_100--Hb_007152_020 Hb_000490_030 Hb_000490_030 Hb_001936_050--Hb_000490_030 Hb_002874_070 Hb_002874_070 Hb_001936_050--Hb_002874_070 Hb_000358_080 Hb_000358_080 Hb_001936_050--Hb_000358_080 Hb_002818_040 Hb_002818_040 Hb_001936_050--Hb_002818_040 Hb_011496_010 Hb_011496_010 Hb_001936_050--Hb_011496_010 Hb_000340_510 Hb_000340_510 Hb_001936_050--Hb_000340_510 Hb_001981_070--Hb_008453_150 Hb_185467_020 Hb_185467_020 Hb_001981_070--Hb_185467_020 Hb_000084_310 Hb_000084_310 Hb_001981_070--Hb_000084_310 Hb_001981_070--Hb_000165_030 Hb_002631_050 Hb_002631_050 Hb_001981_070--Hb_002631_050 Hb_004852_030 Hb_004852_030 Hb_001981_070--Hb_004852_030 Hb_000028_470--Hb_005754_020 Hb_000028_470--Hb_178968_150 Hb_001493_100 Hb_001493_100 Hb_000028_470--Hb_001493_100 Hb_002377_040 Hb_002377_040 Hb_000028_470--Hb_002377_040 Hb_000784_090 Hb_000784_090 Hb_000028_470--Hb_000784_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.48827 0.248526 0.30814 0.137191 0.924023 1.20421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.772459 0.648979 1.4048 0.208207 0.0880622

CAGE analysis