Hb_001140_250

Information

Type -
Description -
Location Contig1140: 257342-263787
Sequence    

Annotation

kegg
ID rcu:RCOM_1495960
description KDEL motif-containing protein 1 precursor, putative
nr
ID XP_002510788.1
description KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
swissprot
ID B0X1Q4
description O-glucosyltransferase rumi homolog OS=Culex quinquefasciatus GN=CPIJ013394 PE=3 SV=1
trembl
ID B9R9B3
description KDEL motif-containing protein 1, putative OS=Ricinus communis GN=RCOM_1495960 PE=4 SV=1
Gene Ontology
ID GO:0016740
description o-glucosyltransferase rumi homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04207: 257377-259228 , PASA_asmbl_04208: 259269-260554
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_250 0.0 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
2 Hb_007101_170 0.0905331431 - - hypothetical protein POPTR_0010s10490g [Populus trichocarpa]
3 Hb_002701_080 0.0968285611 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Jatropha curcas]
4 Hb_002400_310 0.1007151033 - - hypothetical protein JCGZ_07138 [Jatropha curcas]
5 Hb_000244_220 0.1008712752 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
6 Hb_000059_210 0.1010910098 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001152_030 0.1026501622 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
8 Hb_010080_060 0.1040127059 - - receptor protein kinase, putative [Ricinus communis]
9 Hb_003747_010 0.1075702994 - - hypothetical protein JCGZ_24080 [Jatropha curcas]
10 Hb_000160_040 0.1099647725 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
11 Hb_004221_050 0.1109701111 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
12 Hb_003073_200 0.1109735497 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
13 Hb_006586_050 0.1119341709 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
14 Hb_004586_180 0.1127209438 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
15 Hb_033152_080 0.1134211332 - - RNA-binding protein Nova-1, putative [Ricinus communis]
16 Hb_106371_010 0.1147835993 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
17 Hb_003020_110 0.1149539367 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
18 Hb_000115_310 0.1162945083 - - PREDICTED: zinc finger protein 6 [Jatropha curcas]
19 Hb_012634_010 0.1164292095 - - PREDICTED: uncharacterized protein LOC105110292 [Populus euphratica]
20 Hb_001790_020 0.1165367043 - - PREDICTED: uncharacterized protein LOC105642165 [Jatropha curcas]

Gene co-expression network

sample Hb_001140_250 Hb_001140_250 Hb_007101_170 Hb_007101_170 Hb_001140_250--Hb_007101_170 Hb_002701_080 Hb_002701_080 Hb_001140_250--Hb_002701_080 Hb_002400_310 Hb_002400_310 Hb_001140_250--Hb_002400_310 Hb_000244_220 Hb_000244_220 Hb_001140_250--Hb_000244_220 Hb_000059_210 Hb_000059_210 Hb_001140_250--Hb_000059_210 Hb_001152_030 Hb_001152_030 Hb_001140_250--Hb_001152_030 Hb_007101_170--Hb_002400_310 Hb_000676_110 Hb_000676_110 Hb_007101_170--Hb_000676_110 Hb_001790_020 Hb_001790_020 Hb_007101_170--Hb_001790_020 Hb_000030_040 Hb_000030_040 Hb_007101_170--Hb_000030_040 Hb_000206_250 Hb_000206_250 Hb_007101_170--Hb_000206_250 Hb_010175_020 Hb_010175_020 Hb_007101_170--Hb_010175_020 Hb_011612_010 Hb_011612_010 Hb_002701_080--Hb_011612_010 Hb_000398_190 Hb_000398_190 Hb_002701_080--Hb_000398_190 Hb_012654_010 Hb_012654_010 Hb_002701_080--Hb_012654_010 Hb_001504_160 Hb_001504_160 Hb_002701_080--Hb_001504_160 Hb_009620_040 Hb_009620_040 Hb_002701_080--Hb_009620_040 Hb_000230_330 Hb_000230_330 Hb_002701_080--Hb_000230_330 Hb_093084_060 Hb_093084_060 Hb_002400_310--Hb_093084_060 Hb_002400_310--Hb_000244_220 Hb_000318_510 Hb_000318_510 Hb_002400_310--Hb_000318_510 Hb_006586_050 Hb_006586_050 Hb_002400_310--Hb_006586_050 Hb_001143_160 Hb_001143_160 Hb_002400_310--Hb_001143_160 Hb_000856_310 Hb_000856_310 Hb_000244_220--Hb_000856_310 Hb_004602_040 Hb_004602_040 Hb_000244_220--Hb_004602_040 Hb_000046_010 Hb_000046_010 Hb_000244_220--Hb_000046_010 Hb_001912_100 Hb_001912_100 Hb_000244_220--Hb_001912_100 Hb_002163_010 Hb_002163_010 Hb_000244_220--Hb_002163_010 Hb_000327_340 Hb_000327_340 Hb_000244_220--Hb_000327_340 Hb_001936_020 Hb_001936_020 Hb_000059_210--Hb_001936_020 Hb_000059_210--Hb_006586_050 Hb_156850_030 Hb_156850_030 Hb_000059_210--Hb_156850_030 Hb_000291_190 Hb_000291_190 Hb_000059_210--Hb_000291_190 Hb_033152_080 Hb_033152_080 Hb_000059_210--Hb_033152_080 Hb_004734_060 Hb_004734_060 Hb_000059_210--Hb_004734_060 Hb_000072_350 Hb_000072_350 Hb_001152_030--Hb_000072_350 Hb_001502_060 Hb_001502_060 Hb_001152_030--Hb_001502_060 Hb_000529_260 Hb_000529_260 Hb_001152_030--Hb_000529_260 Hb_001080_270 Hb_001080_270 Hb_001152_030--Hb_001080_270 Hb_001221_150 Hb_001221_150 Hb_001152_030--Hb_001221_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.8037 26.4799 5.00321 11.6875 46.445 33.1495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.4378 16.6761 19.5305 30.5813 4.61723

CAGE analysis