Hb_001140_270

Information

Type -
Description -
Location Contig1140: 268201-271231
Sequence    

Annotation

kegg
ID eus:EUTSA_v10007804mg
description hypothetical protein
nr
ID KCW71638.1
description hypothetical protein EUGRSUZ_E00166 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059BZJ1
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00166 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04209: 268361-268964 , PASA_asmbl_04210: 269290-270087 , PASA_asmbl_04211: 270159-271293
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_270 0.0 - - hypothetical protein EUGRSUZ_E00166 [Eucalyptus grandis]
2 Hb_026549_020 0.1136068142 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_009767_070 0.11710314 - - PREDICTED: uncharacterized protein LOC105631980 [Jatropha curcas]
4 Hb_000025_030 0.1176388072 - - transcription factor, putative [Ricinus communis]
5 Hb_011519_010 0.1209775639 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
6 Hb_007982_080 0.1245288944 - - PREDICTED: uncharacterized protein LOC105636531 [Jatropha curcas]
7 Hb_003185_010 0.1264699405 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
8 Hb_002600_020 0.1269853246 - - unnamed protein product [Vitis vinifera]
9 Hb_000318_190 0.1277006699 - - hypothetical protein JCGZ_04889 [Jatropha curcas]
10 Hb_003528_010 0.1281954059 transcription factor TF Family: MYB PREDICTED: myb-related protein 3R-1 [Jatropha curcas]
11 Hb_002681_100 0.1295396213 - - PREDICTED: glucuronokinase 1 [Jatropha curcas]
12 Hb_032202_140 0.1304771357 - - PREDICTED: flap endonuclease GEN-like 1 [Jatropha curcas]
13 Hb_000175_510 0.1311039696 - - PREDICTED: probable DNA replication complex GINS protein PSF1 [Jatropha curcas]
14 Hb_000948_230 0.1311150598 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_000175_340 0.1313328925 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
16 Hb_003213_010 0.1335737475 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
17 Hb_000465_160 0.1335955807 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
18 Hb_002197_020 0.1343321398 - - DNA-directed RNA polymerase family protein [Theobroma cacao]
19 Hb_000300_500 0.1347015462 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
20 Hb_000019_150 0.1355677025 - - PREDICTED: uncharacterized protein LOC105630208 [Jatropha curcas]

Gene co-expression network

sample Hb_001140_270 Hb_001140_270 Hb_026549_020 Hb_026549_020 Hb_001140_270--Hb_026549_020 Hb_009767_070 Hb_009767_070 Hb_001140_270--Hb_009767_070 Hb_000025_030 Hb_000025_030 Hb_001140_270--Hb_000025_030 Hb_011519_010 Hb_011519_010 Hb_001140_270--Hb_011519_010 Hb_007982_080 Hb_007982_080 Hb_001140_270--Hb_007982_080 Hb_003185_010 Hb_003185_010 Hb_001140_270--Hb_003185_010 Hb_029259_010 Hb_029259_010 Hb_026549_020--Hb_029259_010 Hb_010577_030 Hb_010577_030 Hb_026549_020--Hb_010577_030 Hb_026549_020--Hb_000025_030 Hb_001012_010 Hb_001012_010 Hb_026549_020--Hb_001012_010 Hb_026549_020--Hb_007982_080 Hb_153553_030 Hb_153553_030 Hb_009767_070--Hb_153553_030 Hb_002600_020 Hb_002600_020 Hb_009767_070--Hb_002600_020 Hb_004312_010 Hb_004312_010 Hb_009767_070--Hb_004312_010 Hb_000951_100 Hb_000951_100 Hb_009767_070--Hb_000951_100 Hb_006615_050 Hb_006615_050 Hb_009767_070--Hb_006615_050 Hb_000081_010 Hb_000081_010 Hb_009767_070--Hb_000081_010 Hb_000019_150 Hb_000019_150 Hb_000025_030--Hb_000019_150 Hb_000808_050 Hb_000808_050 Hb_000025_030--Hb_000808_050 Hb_000094_280 Hb_000094_280 Hb_000025_030--Hb_000094_280 Hb_001143_190 Hb_001143_190 Hb_000025_030--Hb_001143_190 Hb_001450_050 Hb_001450_050 Hb_000025_030--Hb_001450_050 Hb_007416_330 Hb_007416_330 Hb_000025_030--Hb_007416_330 Hb_004162_130 Hb_004162_130 Hb_011519_010--Hb_004162_130 Hb_032202_140 Hb_032202_140 Hb_011519_010--Hb_032202_140 Hb_011519_010--Hb_002600_020 Hb_000917_060 Hb_000917_060 Hb_011519_010--Hb_000917_060 Hb_000465_160 Hb_000465_160 Hb_011519_010--Hb_000465_160 Hb_004410_080 Hb_004410_080 Hb_011519_010--Hb_004410_080 Hb_073973_130 Hb_073973_130 Hb_007982_080--Hb_073973_130 Hb_020367_050 Hb_020367_050 Hb_007982_080--Hb_020367_050 Hb_002197_020 Hb_002197_020 Hb_007982_080--Hb_002197_020 Hb_005288_150 Hb_005288_150 Hb_007982_080--Hb_005288_150 Hb_000185_070 Hb_000185_070 Hb_007982_080--Hb_000185_070 Hb_027428_010 Hb_027428_010 Hb_007982_080--Hb_027428_010 Hb_006588_200 Hb_006588_200 Hb_003185_010--Hb_006588_200 Hb_007416_300 Hb_007416_300 Hb_003185_010--Hb_007416_300 Hb_010381_090 Hb_010381_090 Hb_003185_010--Hb_010381_090 Hb_000317_470 Hb_000317_470 Hb_003185_010--Hb_000317_470 Hb_003549_150 Hb_003549_150 Hb_003185_010--Hb_003549_150 Hb_003994_230 Hb_003994_230 Hb_003185_010--Hb_003994_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.84636 1.75657 4.86068 3.03087 3.571 2.08669
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.07509 2.90885 3.83817 1.99446 0.752424

CAGE analysis