Hb_001140_290

Information

Type -
Description -
Location Contig1140: 275251-276808
Sequence    

Annotation

kegg
ID tcc:TCM_015173
description Actin depolymerizing factor 7
nr
ID KDP22276.1
description hypothetical protein JCGZ_26107 [Jatropha curcas]
swissprot
ID Q67ZM4
description Actin-depolymerizing factor 7 OS=Arabidopsis thaliana GN=ADF7 PE=2 SV=1
trembl
ID A0A067JEI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26107 PE=4 SV=1
Gene Ontology
ID GO:0015629
description actin-depolymerizing factor 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04212: 275174-277157
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_290 0.0 - - hypothetical protein JCGZ_26107 [Jatropha curcas]
2 Hb_002151_070 0.040581112 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Jatropha curcas]
3 Hb_005000_150 0.0546858171 - - conserved hypothetical protein [Ricinus communis]
4 Hb_138977_010 0.0649956823 - - unnamed protein product [Vitis vinifera]
5 Hb_002809_180 0.0651904834 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
6 Hb_000103_440 0.0675853203 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
7 Hb_010589_010 0.0745352235 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
8 Hb_001397_020 0.0755908209 - - cytochrome P450 family protein [Populus trichocarpa]
9 Hb_000172_270 0.0791194126 - - hypothetical protein JCGZ_24087 [Jatropha curcas]
10 Hb_005711_030 0.0802534849 - - hypothetical protein RCOM_0460020 [Ricinus communis]
11 Hb_003058_240 0.0805882824 - - PREDICTED: tubulin beta-5 chain-like [Jatropha curcas]
12 Hb_003152_020 0.0822032967 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
13 Hb_015807_130 0.0849284808 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
14 Hb_001289_070 0.0855698256 - - PREDICTED: protein YLS9-like [Jatropha curcas]
15 Hb_010172_040 0.0872541801 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
16 Hb_001514_050 0.0873575468 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
17 Hb_003549_100 0.092387997 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
18 Hb_000017_180 0.0933982537 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
19 Hb_002835_360 0.0938041589 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
20 Hb_001377_220 0.0948228599 - - dopamine beta-monooxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001140_290 Hb_001140_290 Hb_002151_070 Hb_002151_070 Hb_001140_290--Hb_002151_070 Hb_005000_150 Hb_005000_150 Hb_001140_290--Hb_005000_150 Hb_138977_010 Hb_138977_010 Hb_001140_290--Hb_138977_010 Hb_002809_180 Hb_002809_180 Hb_001140_290--Hb_002809_180 Hb_000103_440 Hb_000103_440 Hb_001140_290--Hb_000103_440 Hb_010589_010 Hb_010589_010 Hb_001140_290--Hb_010589_010 Hb_002151_070--Hb_005000_150 Hb_002151_070--Hb_000103_440 Hb_000813_070 Hb_000813_070 Hb_002151_070--Hb_000813_070 Hb_005711_030 Hb_005711_030 Hb_002151_070--Hb_005711_030 Hb_001289_070 Hb_001289_070 Hb_002151_070--Hb_001289_070 Hb_001514_050 Hb_001514_050 Hb_005000_150--Hb_001514_050 Hb_003152_020 Hb_003152_020 Hb_005000_150--Hb_003152_020 Hb_001397_020 Hb_001397_020 Hb_005000_150--Hb_001397_020 Hb_005000_150--Hb_001289_070 Hb_000172_270 Hb_000172_270 Hb_138977_010--Hb_000172_270 Hb_138977_010--Hb_002151_070 Hb_138977_010--Hb_010589_010 Hb_002662_070 Hb_002662_070 Hb_138977_010--Hb_002662_070 Hb_138977_010--Hb_002809_180 Hb_010172_040 Hb_010172_040 Hb_002809_180--Hb_010172_040 Hb_002809_180--Hb_001397_020 Hb_003549_100 Hb_003549_100 Hb_002809_180--Hb_003549_100 Hb_002809_180--Hb_010589_010 Hb_002809_180--Hb_003152_020 Hb_003058_240 Hb_003058_240 Hb_000103_440--Hb_003058_240 Hb_000103_440--Hb_002809_180 Hb_000103_440--Hb_005711_030 Hb_000103_440--Hb_003152_020 Hb_010589_010--Hb_001397_020 Hb_029587_010 Hb_029587_010 Hb_010589_010--Hb_029587_010 Hb_001433_090 Hb_001433_090 Hb_010589_010--Hb_001433_090 Hb_010589_010--Hb_003549_100 Hb_000002_110 Hb_000002_110 Hb_010589_010--Hb_000002_110 Hb_001500_130 Hb_001500_130 Hb_010589_010--Hb_001500_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.80727 5.8108 29.4784 0.0866187 0.0589833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.339608 25.9789

CAGE analysis