Hb_001140_300

Information

Type -
Description -
Location Contig1140: 278324-281308
Sequence    

Annotation

kegg
ID cam:101495326
description tubulin beta-1 chain-like
nr
ID XP_004496560.1
description PREDICTED: tubulin beta-1 chain [Cicer arietinum]
swissprot
ID P37392
description Tubulin beta-1 chain OS=Lupinus albus GN=TUBB1 PE=3 SV=1
trembl
ID A0A058ZXC7
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00264 PE=3 SV=1
Gene Ontology
ID GO:0005874
description tubulin beta-1 chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04213: 278492-281544
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_300 0.0 - - PREDICTED: tubulin beta-1 chain [Cicer arietinum]
2 Hb_007218_040 0.0736425336 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
3 Hb_025787_020 0.0765332035 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
4 Hb_001056_040 0.0779803258 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
5 Hb_007632_070 0.0834116047 - - kinase, putative [Ricinus communis]
6 Hb_005181_170 0.0909649691 - - PREDICTED: aldehyde dehydrogenase 22A1 [Jatropha curcas]
7 Hb_001396_030 0.0912642725 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
8 Hb_010962_020 0.0917396448 transcription factor TF Family: OFP hypothetical protein RCOM_0815310 [Ricinus communis]
9 Hb_000112_080 0.0921543881 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
10 Hb_085962_010 0.0926177211 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
11 Hb_001047_090 0.0940798194 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]
12 Hb_127839_010 0.1000902898 - - hypothetical protein PRUPE_ppa000956mg [Prunus persica]
13 Hb_002902_060 0.1011363595 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
14 Hb_004435_020 0.1045051666 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
15 Hb_087992_010 0.1047777194 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
16 Hb_174639_010 0.1065605029 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000003_750 0.1076560606 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
18 Hb_001863_330 0.1079543201 - - RNA-binding region-containing protein, putative [Ricinus communis]
19 Hb_016333_010 0.1084508616 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
20 Hb_012518_080 0.1088786194 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_001140_300 Hb_001140_300 Hb_007218_040 Hb_007218_040 Hb_001140_300--Hb_007218_040 Hb_025787_020 Hb_025787_020 Hb_001140_300--Hb_025787_020 Hb_001056_040 Hb_001056_040 Hb_001140_300--Hb_001056_040 Hb_007632_070 Hb_007632_070 Hb_001140_300--Hb_007632_070 Hb_005181_170 Hb_005181_170 Hb_001140_300--Hb_005181_170 Hb_001396_030 Hb_001396_030 Hb_001140_300--Hb_001396_030 Hb_007218_040--Hb_001396_030 Hb_000112_080 Hb_000112_080 Hb_007218_040--Hb_000112_080 Hb_168918_010 Hb_168918_010 Hb_007218_040--Hb_168918_010 Hb_007811_020 Hb_007811_020 Hb_007218_040--Hb_007811_020 Hb_004435_020 Hb_004435_020 Hb_007218_040--Hb_004435_020 Hb_009252_080 Hb_009252_080 Hb_025787_020--Hb_009252_080 Hb_000162_190 Hb_000162_190 Hb_025787_020--Hb_000162_190 Hb_025787_020--Hb_001056_040 Hb_000345_230 Hb_000345_230 Hb_025787_020--Hb_000345_230 Hb_001709_090 Hb_001709_090 Hb_025787_020--Hb_001709_090 Hb_001056_040--Hb_009252_080 Hb_174639_010 Hb_174639_010 Hb_001056_040--Hb_174639_010 Hb_002045_210 Hb_002045_210 Hb_001056_040--Hb_002045_210 Hb_001056_040--Hb_001709_090 Hb_001709_120 Hb_001709_120 Hb_001056_040--Hb_001709_120 Hb_127839_010 Hb_127839_010 Hb_007632_070--Hb_127839_010 Hb_000563_470 Hb_000563_470 Hb_007632_070--Hb_000563_470 Hb_016333_010 Hb_016333_010 Hb_007632_070--Hb_016333_010 Hb_001863_330 Hb_001863_330 Hb_007632_070--Hb_001863_330 Hb_087992_010 Hb_087992_010 Hb_007632_070--Hb_087992_010 Hb_005181_170--Hb_000112_080 Hb_005181_170--Hb_007218_040 Hb_000297_210 Hb_000297_210 Hb_005181_170--Hb_000297_210 Hb_004122_010 Hb_004122_010 Hb_005181_170--Hb_004122_010 Hb_005181_170--Hb_001396_030 Hb_085962_010 Hb_085962_010 Hb_001396_030--Hb_085962_010 Hb_027506_030 Hb_027506_030 Hb_001396_030--Hb_027506_030 Hb_001396_030--Hb_000112_080 Hb_000303_060 Hb_000303_060 Hb_001396_030--Hb_000303_060 Hb_005542_120 Hb_005542_120 Hb_001396_030--Hb_005542_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.153171 1.61632 33.8911 56.2103 0.0520508 0.1488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0459891 5.69529 17.8722

CAGE analysis