Hb_001140_340

Information

Type -
Description -
Location Contig1140: 292784-295560
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_340 0.0 - - -
2 Hb_029475_010 0.0556576238 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000329_640 0.1378084943 - - -
4 Hb_006711_050 0.142059758 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
5 Hb_178817_010 0.144111981 - - protease [Gossypium hirsutum]
6 Hb_012702_030 0.1495160913 - - hypothetical protein POPTR_0077s002001g, partial [Populus trichocarpa]
7 Hb_003673_030 0.1572164949 - - hypothetical protein POPTR_0011s11940g [Populus trichocarpa]
8 Hb_018616_030 0.170776856 - - hypothetical protein B456_008G198600 [Gossypium raimondii]
9 Hb_001140_230 0.2096941502 - - -
10 Hb_003947_010 0.2143576929 - - hypothetical protein JCGZ_24829 [Jatropha curcas]
11 Hb_000521_310 0.2493255518 - - -
12 Hb_011113_020 0.2511545771 - - hypothetical protein CICLE_v10018209mg [Citrus clementina]
13 Hb_030399_010 0.2525035525 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
14 Hb_000733_110 0.2965881195 - - hypothetical protein JCGZ_01360 [Jatropha curcas]
15 Hb_031862_260 0.3020458903 - - conserved hypothetical protein [Ricinus communis]
16 Hb_027506_050 0.3310571532 - - -
17 Hb_030545_040 0.3473947434 - - -
18 Hb_012753_080 0.3475074347 - - -
19 Hb_000107_320 0.3522900783 - - hypothetical protein POPTR_0004s21930g [Populus trichocarpa]
20 Hb_075351_010 0.3623041553 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_001140_340 Hb_001140_340 Hb_029475_010 Hb_029475_010 Hb_001140_340--Hb_029475_010 Hb_000329_640 Hb_000329_640 Hb_001140_340--Hb_000329_640 Hb_006711_050 Hb_006711_050 Hb_001140_340--Hb_006711_050 Hb_178817_010 Hb_178817_010 Hb_001140_340--Hb_178817_010 Hb_012702_030 Hb_012702_030 Hb_001140_340--Hb_012702_030 Hb_003673_030 Hb_003673_030 Hb_001140_340--Hb_003673_030 Hb_029475_010--Hb_178817_010 Hb_029475_010--Hb_006711_050 Hb_029475_010--Hb_003673_030 Hb_029475_010--Hb_012702_030 Hb_029475_010--Hb_000329_640 Hb_000329_640--Hb_012702_030 Hb_000329_640--Hb_006711_050 Hb_030399_010 Hb_030399_010 Hb_000329_640--Hb_030399_010 Hb_000329_640--Hb_003673_030 Hb_006711_050--Hb_012702_030 Hb_006711_050--Hb_003673_030 Hb_006711_050--Hb_178817_010 Hb_006711_050--Hb_030399_010 Hb_178817_010--Hb_003673_030 Hb_178817_010--Hb_012702_030 Hb_011113_020 Hb_011113_020 Hb_178817_010--Hb_011113_020 Hb_012702_030--Hb_003673_030 Hb_012702_030--Hb_030399_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.696356 0.70155 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.47615 0

CAGE analysis