Hb_001140_360

Information

Type -
Description -
Location Contig1140: 311163-312385
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04219: 311261-312393 , PASA_asmbl_04220: 313194-316292 , PASA_asmbl_04221: 313194-314468
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_360 0.0 - - -
2 Hb_001004_140 0.1097289106 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
3 Hb_000732_190 0.1191413108 - - structural molecule, putative [Ricinus communis]
4 Hb_000144_120 0.1238642502 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_012760_040 0.1252645559 - - PREDICTED: aconitate hydratase 1 [Jatropha curcas]
6 Hb_082741_010 0.1342392224 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
7 Hb_008053_060 0.1384950634 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
8 Hb_000008_090 0.1391499673 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
9 Hb_042474_010 0.1448824084 - - PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Jatropha curcas]
10 Hb_007185_040 0.1450116507 - - PREDICTED: pyrroline-5-carboxylate reductase [Jatropha curcas]
11 Hb_001726_110 0.1453051326 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 19 [Jatropha curcas]
12 Hb_000555_100 0.145500729 - - hypothetical protein JCGZ_14689 [Jatropha curcas]
13 Hb_008226_070 0.1484894273 - - PREDICTED: expansin-A8 [Jatropha curcas]
14 Hb_007257_060 0.1486131333 - - PREDICTED: omega-amidase,chloroplastic [Jatropha curcas]
15 Hb_000345_320 0.152446564 transcription factor TF Family: MYB-related PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Jatropha curcas]
16 Hb_000174_140 0.1528226414 - - JHL23J11.8 [Jatropha curcas]
17 Hb_006060_020 0.1530564158 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
18 Hb_019863_030 0.1538812228 - - hypothetical protein JCGZ_00393 [Jatropha curcas]
19 Hb_004005_020 0.1550751465 - - PREDICTED: nudix hydrolase 20, chloroplastic-like isoform X1 [Jatropha curcas]
20 Hb_006916_110 0.1557409717 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001140_360 Hb_001140_360 Hb_001004_140 Hb_001004_140 Hb_001140_360--Hb_001004_140 Hb_000732_190 Hb_000732_190 Hb_001140_360--Hb_000732_190 Hb_000144_120 Hb_000144_120 Hb_001140_360--Hb_000144_120 Hb_012760_040 Hb_012760_040 Hb_001140_360--Hb_012760_040 Hb_082741_010 Hb_082741_010 Hb_001140_360--Hb_082741_010 Hb_008053_060 Hb_008053_060 Hb_001140_360--Hb_008053_060 Hb_000008_090 Hb_000008_090 Hb_001004_140--Hb_000008_090 Hb_001004_140--Hb_000144_120 Hb_007185_040 Hb_007185_040 Hb_001004_140--Hb_007185_040 Hb_089140_040 Hb_089140_040 Hb_001004_140--Hb_089140_040 Hb_006468_010 Hb_006468_010 Hb_001004_140--Hb_006468_010 Hb_000174_140 Hb_000174_140 Hb_001004_140--Hb_000174_140 Hb_001728_020 Hb_001728_020 Hb_000732_190--Hb_001728_020 Hb_000979_110 Hb_000979_110 Hb_000732_190--Hb_000979_110 Hb_000331_510 Hb_000331_510 Hb_000732_190--Hb_000331_510 Hb_000926_260 Hb_000926_260 Hb_000732_190--Hb_000926_260 Hb_000012_240 Hb_000012_240 Hb_000732_190--Hb_000012_240 Hb_007441_280 Hb_007441_280 Hb_000144_120--Hb_007441_280 Hb_000144_120--Hb_012760_040 Hb_000327_250 Hb_000327_250 Hb_000144_120--Hb_000327_250 Hb_001900_100 Hb_001900_100 Hb_000144_120--Hb_001900_100 Hb_001221_020 Hb_001221_020 Hb_000144_120--Hb_001221_020 Hb_042474_010 Hb_042474_010 Hb_012760_040--Hb_042474_010 Hb_000190_090 Hb_000190_090 Hb_012760_040--Hb_000190_090 Hb_008226_070 Hb_008226_070 Hb_012760_040--Hb_008226_070 Hb_006916_110 Hb_006916_110 Hb_012760_040--Hb_006916_110 Hb_012760_040--Hb_082741_010 Hb_082741_010--Hb_006916_110 Hb_000345_320 Hb_000345_320 Hb_082741_010--Hb_000345_320 Hb_082741_010--Hb_042474_010 Hb_000347_450 Hb_000347_450 Hb_082741_010--Hb_000347_450 Hb_000209_100 Hb_000209_100 Hb_082741_010--Hb_000209_100 Hb_008053_060--Hb_001004_140 Hb_008053_060--Hb_089140_040 Hb_008053_060--Hb_007185_040 Hb_008053_060--Hb_006468_010 Hb_003636_080 Hb_003636_080 Hb_008053_060--Hb_003636_080 Hb_005489_140 Hb_005489_140 Hb_008053_060--Hb_005489_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.266101 1.01917 1.24727 1.42504 0.277323 0.268486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.565172 0.991697 0.507362 2.18052 0.352678

CAGE analysis