Hb_001141_030

Information

Type -
Description -
Location Contig1141: 33151-44020
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa024854mg
description hypothetical protein
nr
ID XP_007226551.1
description hypothetical protein PRUPE_ppa024854mg [Prunus persica]
swissprot
ID Q9LUI1
description Leucine-rich repeat extensin-like protein 6 OS=Arabidopsis thaliana GN=LRX6 PE=2 SV=1
trembl
ID M5Y710
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024854mg PE=3 SV=1
Gene Ontology
ID GO:0005840
description leucine-rich repeat extensin-like protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04227: 41779-43869
cDNA
(Sanger)
(ID:Location)		 030_A12.ab1: 41779-43399

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_030 0.0 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
2 Hb_003203_040 0.0512084306 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
3 Hb_001109_020 0.0692613782 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001143_080 0.0708504881 - - PREDICTED: F-box protein 7 [Jatropha curcas]
5 Hb_003455_040 0.0741612009 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
6 Hb_012753_160 0.0763003031 - - ara4-interacting protein, putative [Ricinus communis]
7 Hb_003994_040 0.0768093893 - - -
8 Hb_002217_450 0.076980722 - - PREDICTED: probable prefoldin subunit 3 [Jatropha curcas]
9 Hb_001998_050 0.0771415875 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
10 Hb_001829_060 0.0774301634 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
11 Hb_000441_190 0.0804408209 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
12 Hb_005731_170 0.0804774116 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
13 Hb_000023_340 0.0809774244 - - PREDICTED: enhancer of rudimentary homolog [Jatropha curcas]
14 Hb_000086_070 0.0820473691 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
15 Hb_001863_400 0.083580934 - - hypothetical protein EUGRSUZ_F03302 [Eucalyptus grandis]
16 Hb_001638_020 0.0863133963 - - PREDICTED: protein OSB1, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_011628_040 0.0866005123 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
18 Hb_138585_060 0.0876412514 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
19 Hb_007100_030 0.0887306317 - - 40S ribosomal protein S17B [Hevea brasiliensis]
20 Hb_001505_020 0.0887650266 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]

Gene co-expression network

sample Hb_001141_030 Hb_001141_030 Hb_003203_040 Hb_003203_040 Hb_001141_030--Hb_003203_040 Hb_001109_020 Hb_001109_020 Hb_001141_030--Hb_001109_020 Hb_001143_080 Hb_001143_080 Hb_001141_030--Hb_001143_080 Hb_003455_040 Hb_003455_040 Hb_001141_030--Hb_003455_040 Hb_012753_160 Hb_012753_160 Hb_001141_030--Hb_012753_160 Hb_003994_040 Hb_003994_040 Hb_001141_030--Hb_003994_040 Hb_011628_040 Hb_011628_040 Hb_003203_040--Hb_011628_040 Hb_003893_050 Hb_003893_050 Hb_003203_040--Hb_003893_050 Hb_010672_070 Hb_010672_070 Hb_003203_040--Hb_010672_070 Hb_005511_160 Hb_005511_160 Hb_003203_040--Hb_005511_160 Hb_005063_050 Hb_005063_050 Hb_003203_040--Hb_005063_050 Hb_001829_060 Hb_001829_060 Hb_001109_020--Hb_001829_060 Hb_000046_110 Hb_000046_110 Hb_001109_020--Hb_000046_110 Hb_003927_130 Hb_003927_130 Hb_001109_020--Hb_003927_130 Hb_000205_270 Hb_000205_270 Hb_001109_020--Hb_000205_270 Hb_000883_050 Hb_000883_050 Hb_001109_020--Hb_000883_050 Hb_000086_070 Hb_000086_070 Hb_001109_020--Hb_000086_070 Hb_001638_020 Hb_001638_020 Hb_001143_080--Hb_001638_020 Hb_001998_050 Hb_001998_050 Hb_001143_080--Hb_001998_050 Hb_001269_170 Hb_001269_170 Hb_001143_080--Hb_001269_170 Hb_000227_230 Hb_000227_230 Hb_001143_080--Hb_000227_230 Hb_000072_080 Hb_000072_080 Hb_001143_080--Hb_000072_080 Hb_003376_030 Hb_003376_030 Hb_003455_040--Hb_003376_030 Hb_003455_040--Hb_003994_040 Hb_000173_220 Hb_000173_220 Hb_003455_040--Hb_000173_220 Hb_003455_040--Hb_012753_160 Hb_002027_210 Hb_002027_210 Hb_003455_040--Hb_002027_210 Hb_002097_060 Hb_002097_060 Hb_003455_040--Hb_002097_060 Hb_012675_060 Hb_012675_060 Hb_012753_160--Hb_012675_060 Hb_001140_060 Hb_001140_060 Hb_012753_160--Hb_001140_060 Hb_012753_160--Hb_000072_080 Hb_012753_160--Hb_001998_050 Hb_000574_480 Hb_000574_480 Hb_012753_160--Hb_000574_480 Hb_017948_010 Hb_017948_010 Hb_003994_040--Hb_017948_010 Hb_003053_030 Hb_003053_030 Hb_003994_040--Hb_003053_030 Hb_005474_060 Hb_005474_060 Hb_003994_040--Hb_005474_060 Hb_003994_040--Hb_000173_220 Hb_011644_030 Hb_011644_030 Hb_003994_040--Hb_011644_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5081 3.47949 5.8575 8.12601 9.67443 16.6309
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.9933 43.4462 27.8714 9.18934 5.14308

CAGE analysis