Hb_001141_070

Information

Type -
Description -
Location Contig1141: 76733-79414
Sequence    

Annotation

kegg
ID rcu:RCOM_0911480
description 5-methyltetrahydrofolate:homocysteine methyltransferase, putative (EC:2.1.1.10)
nr
ID XP_012069679.1
description PREDICTED: homocysteine S-methyltransferase 3 [Jatropha curcas]
swissprot
ID Q8LAX0
description Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana GN=HMT3 PE=1 SV=2
trembl
ID A0A067L836
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02212 PE=4 SV=1
Gene Ontology
ID GO:0005886
description homocysteine s-methyltransferase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04233: 76854-79445
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_070 0.0 - - PREDICTED: homocysteine S-methyltransferase 3 [Jatropha curcas]
2 Hb_005288_200 0.1590725209 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_005551_060 0.1685406591 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
4 Hb_155396_010 0.1935854175 - - TMV resistance protein N, putative [Ricinus communis]
5 Hb_000003_220 0.1945523136 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
6 Hb_155702_010 0.2024265147 - - Tetraspanin-5 [Gossypium arboreum]
7 Hb_005306_100 0.2030709538 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
8 Hb_116086_010 0.2045331255 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
9 Hb_000540_120 0.2065853939 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
10 Hb_000525_010 0.2068013798 - - ring finger protein, putative [Ricinus communis]
11 Hb_001950_030 0.2071599636 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
12 Hb_004888_020 0.2073988021 transcription factor TF Family: TCP PREDICTED: transcription factor TCP7-like [Jatropha curcas]
13 Hb_000032_620 0.2074036305 - - hypothetical protein RCOM_1311830 [Ricinus communis]
14 Hb_001096_100 0.2077110055 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001691_150 0.2082315821 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Jatropha curcas]
16 Hb_164945_040 0.2094337924 - - PREDICTED: uncharacterized protein LOC105628261 [Jatropha curcas]
17 Hb_001301_320 0.2110574977 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
18 Hb_001247_120 0.2112595564 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
19 Hb_148121_080 0.2112782399 transcription factor TF Family: C2H2 PREDICTED: protein SHOOT GRAVITROPISM 5 [Populus euphratica]
20 Hb_000011_190 0.2125949669 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6 [Jatropha curcas]

Gene co-expression network

sample Hb_001141_070 Hb_001141_070 Hb_005288_200 Hb_005288_200 Hb_001141_070--Hb_005288_200 Hb_005551_060 Hb_005551_060 Hb_001141_070--Hb_005551_060 Hb_155396_010 Hb_155396_010 Hb_001141_070--Hb_155396_010 Hb_000003_220 Hb_000003_220 Hb_001141_070--Hb_000003_220 Hb_155702_010 Hb_155702_010 Hb_001141_070--Hb_155702_010 Hb_005306_100 Hb_005306_100 Hb_001141_070--Hb_005306_100 Hb_005288_200--Hb_155396_010 Hb_005288_200--Hb_155702_010 Hb_003203_020 Hb_003203_020 Hb_005288_200--Hb_003203_020 Hb_000525_010 Hb_000525_010 Hb_005288_200--Hb_000525_010 Hb_000011_190 Hb_000011_190 Hb_005288_200--Hb_000011_190 Hb_000032_620 Hb_000032_620 Hb_005288_200--Hb_000032_620 Hb_001247_120 Hb_001247_120 Hb_005551_060--Hb_001247_120 Hb_027506_020 Hb_027506_020 Hb_005551_060--Hb_027506_020 Hb_001220_030 Hb_001220_030 Hb_005551_060--Hb_001220_030 Hb_000140_070 Hb_000140_070 Hb_005551_060--Hb_000140_070 Hb_002745_010 Hb_002745_010 Hb_005551_060--Hb_002745_010 Hb_146464_010 Hb_146464_010 Hb_005551_060--Hb_146464_010 Hb_003373_040 Hb_003373_040 Hb_155396_010--Hb_003373_040 Hb_004109_030 Hb_004109_030 Hb_155396_010--Hb_004109_030 Hb_116086_010 Hb_116086_010 Hb_155396_010--Hb_116086_010 Hb_005725_060 Hb_005725_060 Hb_155396_010--Hb_005725_060 Hb_001864_060 Hb_001864_060 Hb_155396_010--Hb_001864_060 Hb_003175_030 Hb_003175_030 Hb_155396_010--Hb_003175_030 Hb_004143_040 Hb_004143_040 Hb_000003_220--Hb_004143_040 Hb_000003_220--Hb_001864_060 Hb_000574_540 Hb_000574_540 Hb_000003_220--Hb_000574_540 Hb_008511_090 Hb_008511_090 Hb_000003_220--Hb_008511_090 Hb_004355_020 Hb_004355_020 Hb_000003_220--Hb_004355_020 Hb_000000_270 Hb_000000_270 Hb_000003_220--Hb_000000_270 Hb_011465_030 Hb_011465_030 Hb_155702_010--Hb_011465_030 Hb_017075_030 Hb_017075_030 Hb_155702_010--Hb_017075_030 Hb_002002_030 Hb_002002_030 Hb_155702_010--Hb_002002_030 Hb_001769_010 Hb_001769_010 Hb_155702_010--Hb_001769_010 Hb_032202_240 Hb_032202_240 Hb_155702_010--Hb_032202_240 Hb_003106_150 Hb_003106_150 Hb_155702_010--Hb_003106_150 Hb_000562_090 Hb_000562_090 Hb_005306_100--Hb_000562_090 Hb_004888_020 Hb_004888_020 Hb_005306_100--Hb_004888_020 Hb_002671_140 Hb_002671_140 Hb_005306_100--Hb_002671_140 Hb_002681_050 Hb_002681_050 Hb_005306_100--Hb_002681_050 Hb_057878_010 Hb_057878_010 Hb_005306_100--Hb_057878_010 Hb_025623_020 Hb_025623_020 Hb_005306_100--Hb_025623_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.5561 53.5281 4.00907 32.4402 13.3925 25.237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.0279 7.84109 19.5703 4.50013 7.01555

CAGE analysis