Hb_001141_080

Information

Type -
Description -
Location Contig1141: 79954-81990
Sequence    

Annotation

kegg
ID rcu:RCOM_0911490
description hypothetical protein
nr
ID XP_012069678.1
description PREDICTED: protein RDM1 [Jatropha curcas]
swissprot
ID Q9LUJ3
description Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1
trembl
ID A0A067KVT3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02210 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein rdm1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04234: 79944-81900 , PASA_asmbl_04235: 80612-80969 , PASA_asmbl_04236: 80415-80992
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_080 0.0 - - PREDICTED: protein RDM1 [Jatropha curcas]
2 Hb_005147_110 0.0851516585 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
3 Hb_002249_140 0.0944670112 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
4 Hb_009382_020 0.1011283307 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
5 Hb_004310_060 0.101341791 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_008725_250 0.1016514363 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
7 Hb_003428_110 0.1017528972 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
8 Hb_006829_040 0.1049940101 - - hypothetical protein POPTR_0001s44750g [Populus trichocarpa]
9 Hb_000373_270 0.1050714345 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
10 Hb_010866_040 0.1054470857 - - PREDICTED: metal transporter Nramp2-like [Jatropha curcas]
11 Hb_001341_030 0.105640754 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
12 Hb_002169_010 0.106463637 - - PREDICTED: la-related protein 6B [Jatropha curcas]
13 Hb_000732_260 0.1065887343 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
14 Hb_006452_030 0.1078713086 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
15 Hb_000784_090 0.1081814189 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
16 Hb_000138_040 0.1103686613 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
17 Hb_005754_020 0.110463658 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
18 Hb_002960_060 0.1107960056 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 28 [Jatropha curcas]
19 Hb_033491_010 0.1122413512 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
20 Hb_030312_040 0.1123355996 - - hypothetical protein JCGZ_04876 [Jatropha curcas]

Gene co-expression network

sample Hb_001141_080 Hb_001141_080 Hb_005147_110 Hb_005147_110 Hb_001141_080--Hb_005147_110 Hb_002249_140 Hb_002249_140 Hb_001141_080--Hb_002249_140 Hb_009382_020 Hb_009382_020 Hb_001141_080--Hb_009382_020 Hb_004310_060 Hb_004310_060 Hb_001141_080--Hb_004310_060 Hb_008725_250 Hb_008725_250 Hb_001141_080--Hb_008725_250 Hb_003428_110 Hb_003428_110 Hb_001141_080--Hb_003428_110 Hb_005147_110--Hb_008725_250 Hb_005147_110--Hb_004310_060 Hb_001341_030 Hb_001341_030 Hb_005147_110--Hb_001341_030 Hb_005914_230 Hb_005914_230 Hb_005147_110--Hb_005914_230 Hb_018663_020 Hb_018663_020 Hb_005147_110--Hb_018663_020 Hb_000373_270 Hb_000373_270 Hb_005147_110--Hb_000373_270 Hb_000771_110 Hb_000771_110 Hb_002249_140--Hb_000771_110 Hb_002249_140--Hb_008725_250 Hb_000732_260 Hb_000732_260 Hb_002249_140--Hb_000732_260 Hb_002044_090 Hb_002044_090 Hb_002249_140--Hb_002044_090 Hb_000481_010 Hb_000481_010 Hb_002249_140--Hb_000481_010 Hb_000784_090 Hb_000784_090 Hb_002249_140--Hb_000784_090 Hb_000300_620 Hb_000300_620 Hb_009382_020--Hb_000300_620 Hb_000138_040 Hb_000138_040 Hb_009382_020--Hb_000138_040 Hb_000483_350 Hb_000483_350 Hb_009382_020--Hb_000483_350 Hb_001157_030 Hb_001157_030 Hb_009382_020--Hb_001157_030 Hb_005062_070 Hb_005062_070 Hb_009382_020--Hb_005062_070 Hb_002890_280 Hb_002890_280 Hb_009382_020--Hb_002890_280 Hb_000300_280 Hb_000300_280 Hb_004310_060--Hb_000300_280 Hb_004310_060--Hb_008725_250 Hb_000879_140 Hb_000879_140 Hb_004310_060--Hb_000879_140 Hb_004310_060--Hb_005914_230 Hb_004310_060--Hb_018663_020 Hb_008725_250--Hb_005914_230 Hb_000359_170 Hb_000359_170 Hb_008725_250--Hb_000359_170 Hb_012305_070 Hb_012305_070 Hb_008725_250--Hb_012305_070 Hb_017434_090 Hb_017434_090 Hb_003428_110--Hb_017434_090 Hb_000567_200 Hb_000567_200 Hb_003428_110--Hb_000567_200 Hb_001518_020 Hb_001518_020 Hb_003428_110--Hb_001518_020 Hb_003428_110--Hb_009382_020 Hb_003747_240 Hb_003747_240 Hb_003428_110--Hb_003747_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
231.633 57.6374 15.7195 16.1717 118.718 150.786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
163.731 72.2179 95.4281 57.6869 13.3294

CAGE analysis