Hb_001141_140

Information

Type -
Description -
Location Contig1141: 119126-122945
Sequence    

Annotation

kegg
ID tcc:TCM_020662
description 20S proteasome beta subunit D1
nr
ID ADR70866.1
description 20S proteasome beta subunit D3 [Hevea brasiliensis]
swissprot
ID O23714
description Proteasome subunit beta type-2-A OS=Arabidopsis thaliana GN=PBD1 PE=1 SV=1
trembl
ID V5IV09
description Proteasome subunit beta type OS=Hevea brasiliensis GN=PBD3 PE=2 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit beta type-2-a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04239: 119754-122888 , PASA_asmbl_04240: 121438-121622 , PASA_asmbl_04241: 121718-121860
cDNA
(Sanger)
(ID:Location)		 008_H16.ab1: 119760-122725 , 017_F18.ab1: 119754-122622 , 021_K03.ab1: 119741-122763 , 047_O07.ab1: 119754-122811 , 051_K09.ab1: 119747-122692

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_140 0.0 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
2 Hb_006925_040 0.0553142973 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
3 Hb_000735_040 0.0569604119 - - 60S ribosomal protein L32A [Hevea brasiliensis]
4 Hb_010175_040 0.0618377379 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
5 Hb_003226_100 0.0634085044 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
6 Hb_007044_130 0.0641012756 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
7 Hb_003018_020 0.0643512382 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
8 Hb_000506_070 0.0657931222 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
9 Hb_026053_020 0.0707534889 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
10 Hb_143496_010 0.0717861702 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
11 Hb_000996_140 0.0739593803 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
12 Hb_174865_010 0.0759729403 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
13 Hb_001484_070 0.0764733754 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000062_650 0.0766858119 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
15 Hb_008921_020 0.0775986584 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
16 Hb_003053_010 0.0799402088 - - PREDICTED: uncharacterized protein LOC105641481 isoform X2 [Jatropha curcas]
17 Hb_002768_030 0.0802658979 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
18 Hb_000699_160 0.0807361665 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
19 Hb_001979_040 0.0812245815 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
20 Hb_000920_110 0.0812917956 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]

Gene co-expression network

sample Hb_001141_140 Hb_001141_140 Hb_006925_040 Hb_006925_040 Hb_001141_140--Hb_006925_040 Hb_000735_040 Hb_000735_040 Hb_001141_140--Hb_000735_040 Hb_010175_040 Hb_010175_040 Hb_001141_140--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_001141_140--Hb_003226_100 Hb_007044_130 Hb_007044_130 Hb_001141_140--Hb_007044_130 Hb_003018_020 Hb_003018_020 Hb_001141_140--Hb_003018_020 Hb_000046_560 Hb_000046_560 Hb_006925_040--Hb_000046_560 Hb_002783_270 Hb_002783_270 Hb_006925_040--Hb_002783_270 Hb_003053_010 Hb_003053_010 Hb_006925_040--Hb_003053_010 Hb_006925_040--Hb_007044_130 Hb_000996_140 Hb_000996_140 Hb_006925_040--Hb_000996_140 Hb_174865_010 Hb_174865_010 Hb_000735_040--Hb_174865_010 Hb_000506_070 Hb_000506_070 Hb_000735_040--Hb_000506_070 Hb_000093_110 Hb_000093_110 Hb_000735_040--Hb_000093_110 Hb_008921_020 Hb_008921_020 Hb_000735_040--Hb_008921_020 Hb_000735_040--Hb_003018_020 Hb_000261_140 Hb_000261_140 Hb_010175_040--Hb_000261_140 Hb_000920_110 Hb_000920_110 Hb_010175_040--Hb_000920_110 Hb_143496_010 Hb_143496_010 Hb_010175_040--Hb_143496_010 Hb_000417_360 Hb_000417_360 Hb_010175_040--Hb_000417_360 Hb_001616_040 Hb_001616_040 Hb_010175_040--Hb_001616_040 Hb_003226_100--Hb_000920_110 Hb_004157_030 Hb_004157_030 Hb_003226_100--Hb_004157_030 Hb_003226_100--Hb_003018_020 Hb_002056_050 Hb_002056_050 Hb_003226_100--Hb_002056_050 Hb_003226_100--Hb_001616_040 Hb_003226_100--Hb_143496_010 Hb_007044_130--Hb_002783_270 Hb_000260_550 Hb_000260_550 Hb_007044_130--Hb_000260_550 Hb_000062_650 Hb_000062_650 Hb_007044_130--Hb_000062_650 Hb_003894_070 Hb_003894_070 Hb_007044_130--Hb_003894_070 Hb_003018_020--Hb_004157_030 Hb_003018_020--Hb_174865_010 Hb_003018_020--Hb_000506_070 Hb_000836_470 Hb_000836_470 Hb_003018_020--Hb_000836_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.8232 14.0546 39.7051 32.9817 25.9739 25.6549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.9129 118.295 43.045 26.3246 15.9336

CAGE analysis