Hb_001141_180

Information

Type -
Description -
Location Contig1141: 136620-137597
Sequence    

Annotation

kegg
ID pop:POPTR_0010s09550g
description POPTRDRAFT_231139; hypothetical protein
nr
ID NP_001294896.1
description non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
swissprot
ID Q9ZQI8
description Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1
trembl
ID A0A067L6V1
description Non-specific lipid transfer protein A OS=Jatropha curcas GN=JCGZ_02198 PE=2 SV=1
Gene Ontology
ID GO:0008289
description non-specific lipid-transfer protein at2g13820

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_180 0.0 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
2 Hb_004735_030 0.0260849436 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
3 Hb_001031_140 0.0276849168 - - PREDICTED: GDSL esterase/lipase At5g33370-like [Jatropha curcas]
4 Hb_001728_070 0.0280193128 - - PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]
5 Hb_000777_080 0.0315120056 - - hypothetical protein POPTR_0015s15410g [Populus trichocarpa]
6 Hb_001206_110 0.0407195996 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
7 Hb_013394_070 0.0490933003 - - hypothetical protein POPTR_0013s12090g [Populus trichocarpa]
8 Hb_007894_200 0.052764555 - - ubiquitin-conjugating enzyme variant, putative [Ricinus communis]
9 Hb_004724_090 0.0534270971 - - PREDICTED: uncharacterized protein LOC105638638 [Jatropha curcas]
10 Hb_002043_020 0.0539092287 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
11 Hb_088689_010 0.05511639 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
12 Hb_008173_160 0.055170538 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
13 Hb_002973_100 0.0572339012 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Populus euphratica]
14 Hb_000557_070 0.0607970567 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
15 Hb_001642_020 0.0614655212 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
16 Hb_004993_020 0.0617401291 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
17 Hb_016734_100 0.0649795034 - - -
18 Hb_012807_040 0.0661029287 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
19 Hb_001426_020 0.0680009157 - - hypothetical protein CICLE_v10033594mg, partial [Citrus clementina]
20 Hb_008147_020 0.0685989897 - - hypothetical protein JCGZ_25652 [Jatropha curcas]

Gene co-expression network

sample Hb_001141_180 Hb_001141_180 Hb_004735_030 Hb_004735_030 Hb_001141_180--Hb_004735_030 Hb_001031_140 Hb_001031_140 Hb_001141_180--Hb_001031_140 Hb_001728_070 Hb_001728_070 Hb_001141_180--Hb_001728_070 Hb_000777_080 Hb_000777_080 Hb_001141_180--Hb_000777_080 Hb_001206_110 Hb_001206_110 Hb_001141_180--Hb_001206_110 Hb_013394_070 Hb_013394_070 Hb_001141_180--Hb_013394_070 Hb_004735_030--Hb_000777_080 Hb_004735_030--Hb_013394_070 Hb_004735_030--Hb_001728_070 Hb_004724_090 Hb_004724_090 Hb_004735_030--Hb_004724_090 Hb_004735_030--Hb_001206_110 Hb_001642_020 Hb_001642_020 Hb_001031_140--Hb_001642_020 Hb_001031_140--Hb_001728_070 Hb_016734_100 Hb_016734_100 Hb_001031_140--Hb_016734_100 Hb_001031_140--Hb_001206_110 Hb_002043_020 Hb_002043_020 Hb_001031_140--Hb_002043_020 Hb_001728_070--Hb_000777_080 Hb_088689_010 Hb_088689_010 Hb_001728_070--Hb_088689_010 Hb_008173_160 Hb_008173_160 Hb_001728_070--Hb_008173_160 Hb_001728_070--Hb_001206_110 Hb_007894_200 Hb_007894_200 Hb_001728_070--Hb_007894_200 Hb_000777_080--Hb_013394_070 Hb_000777_080--Hb_007894_200 Hb_000777_080--Hb_088689_010 Hb_000777_080--Hb_008173_160 Hb_001206_110--Hb_000777_080 Hb_001206_110--Hb_088689_010 Hb_001206_110--Hb_008173_160 Hb_001206_110--Hb_007894_200 Hb_002973_100 Hb_002973_100 Hb_001206_110--Hb_002973_100 Hb_013394_070--Hb_002973_100 Hb_013394_070--Hb_007894_200 Hb_013394_070--Hb_008173_160 Hb_013394_070--Hb_088689_010 Hb_013394_070--Hb_001728_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.209851 0.121094 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.182619

CAGE analysis