Hb_001141_230

Information

Type -
Description -
Location Contig1141: 163393-165925
Sequence    

Annotation

kegg
ID rcu:RCOM_0911830
description hypothetical protein
nr
ID XP_012069658.1
description PREDICTED: uncharacterized protein LOC105632008 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L7Z5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02192 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04247: 163564-165969 , PASA_asmbl_04248: 163564-165969
cDNA
(Sanger)
(ID:Location)		 026_C16.ab1: 163729-164052

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_230 0.0 - - PREDICTED: uncharacterized protein LOC105632008 [Jatropha curcas]
2 Hb_006831_080 0.1361157445 - - PREDICTED: uncharacterized protein LOC105642126 [Jatropha curcas]
3 Hb_139785_020 0.1642642748 - - PREDICTED: uncharacterized protein LOC105641137 [Jatropha curcas]
4 Hb_001596_020 0.1689713987 - - hypothetical protein CICLE_v10014140mg [Citrus clementina]
5 Hb_004586_240 0.176130735 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
6 Hb_000003_020 0.1877785333 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
7 Hb_028001_020 0.1886210358 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
8 Hb_001832_210 0.1887639371 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
9 Hb_026549_050 0.1901389644 - - PREDICTED: uncharacterized protein LOC105636246 isoform X2 [Jatropha curcas]
10 Hb_002671_060 0.1906746696 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
11 Hb_003607_060 0.1912169476 - - PREDICTED: alcohol dehydrogenase-like [Jatropha curcas]
12 Hb_010174_190 0.1952597586 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
13 Hb_012727_010 0.1998360817 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
14 Hb_000465_260 0.2011768955 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
15 Hb_003106_180 0.2024804403 - - Peroxidase 65 precursor, putative [Ricinus communis]
16 Hb_000793_040 0.2026744837 - - PREDICTED: transcription factor LHW [Jatropha curcas]
17 Hb_003894_100 0.2031262724 - - PREDICTED: AT-hook motif nuclear-localized protein 1-like [Jatropha curcas]
18 Hb_001856_170 0.2034155576 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
19 Hb_002739_040 0.2043339538 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
20 Hb_020378_010 0.2046762748 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001141_230 Hb_001141_230 Hb_006831_080 Hb_006831_080 Hb_001141_230--Hb_006831_080 Hb_139785_020 Hb_139785_020 Hb_001141_230--Hb_139785_020 Hb_001596_020 Hb_001596_020 Hb_001141_230--Hb_001596_020 Hb_004586_240 Hb_004586_240 Hb_001141_230--Hb_004586_240 Hb_000003_020 Hb_000003_020 Hb_001141_230--Hb_000003_020 Hb_028001_020 Hb_028001_020 Hb_001141_230--Hb_028001_020 Hb_006831_080--Hb_001596_020 Hb_001856_170 Hb_001856_170 Hb_006831_080--Hb_001856_170 Hb_000120_310 Hb_000120_310 Hb_006831_080--Hb_000120_310 Hb_006831_080--Hb_004586_240 Hb_001832_210 Hb_001832_210 Hb_006831_080--Hb_001832_210 Hb_004958_020 Hb_004958_020 Hb_139785_020--Hb_004958_020 Hb_004958_010 Hb_004958_010 Hb_139785_020--Hb_004958_010 Hb_139785_020--Hb_000003_020 Hb_002267_100 Hb_002267_100 Hb_139785_020--Hb_002267_100 Hb_002307_010 Hb_002307_010 Hb_139785_020--Hb_002307_010 Hb_001596_020--Hb_001856_170 Hb_001596_020--Hb_000120_310 Hb_001369_160 Hb_001369_160 Hb_001596_020--Hb_001369_160 Hb_001596_020--Hb_004586_240 Hb_001178_080 Hb_001178_080 Hb_001596_020--Hb_001178_080 Hb_005504_030 Hb_005504_030 Hb_004586_240--Hb_005504_030 Hb_000009_140 Hb_000009_140 Hb_004586_240--Hb_000009_140 Hb_004586_240--Hb_001856_170 Hb_004586_240--Hb_000120_310 Hb_004586_240--Hb_001369_160 Hb_003142_060 Hb_003142_060 Hb_000003_020--Hb_003142_060 Hb_002739_040 Hb_002739_040 Hb_000003_020--Hb_002739_040 Hb_004324_030 Hb_004324_030 Hb_000003_020--Hb_004324_030 Hb_004079_100 Hb_004079_100 Hb_000003_020--Hb_004079_100 Hb_000085_380 Hb_000085_380 Hb_000003_020--Hb_000085_380 Hb_003106_230 Hb_003106_230 Hb_000003_020--Hb_003106_230 Hb_005779_030 Hb_005779_030 Hb_028001_020--Hb_005779_030 Hb_000465_260 Hb_000465_260 Hb_028001_020--Hb_000465_260 Hb_000863_030 Hb_000863_030 Hb_028001_020--Hb_000863_030 Hb_000000_110 Hb_000000_110 Hb_028001_020--Hb_000000_110 Hb_000025_400 Hb_000025_400 Hb_028001_020--Hb_000025_400 Hb_000110_380 Hb_000110_380 Hb_028001_020--Hb_000110_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.6716 42.1527 21.5966 49.6183 0.343617 0.514524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.11123 3.84759 0.79273 48.7885 17.7805

CAGE analysis