Hb_001141_270

Information

Type -
Description -
Location Contig1141: 189464-190777
Sequence    

Annotation

kegg
ID rcu:RCOM_0911860
description hypothetical protein
nr
ID XP_012069654.1
description PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KVG1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02189 PE=4 SV=1
Gene Ontology
ID GO:0006259
description c-8 sterol

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04252: 189601-190769
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_270 0.0 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
2 Hb_000815_010 0.0472375798 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105117338 [Populus euphratica]
3 Hb_007477_010 0.0863581975 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA9 [Phoenix dactylifera]
4 Hb_005666_010 0.10216546 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
5 Hb_000185_180 0.102493736 - - hypothetical protein CISIN_1g037968mg, partial [Citrus sinensis]
6 Hb_002999_020 0.1097490513 - - PREDICTED: ribonuclease 3-like [Jatropha curcas]
7 Hb_000742_040 0.110328402 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
8 Hb_003427_030 0.111204957 - - -
9 Hb_009367_070 0.1216709145 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
10 Hb_124677_070 0.1227029912 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
11 Hb_004933_010 0.1229726673 - - hypothetical protein POPTR_0018s10810g [Populus trichocarpa]
12 Hb_153258_030 0.1234513312 - - hypothetical protein RCOM_0853150 [Ricinus communis]
13 Hb_009662_040 0.1277101297 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
14 Hb_011628_010 0.1286604566 - - tonoplast intrinsic protein, putative [Ricinus communis]
15 Hb_001635_140 0.130693876 - - protein with unknown function [Ricinus communis]
16 Hb_016734_110 0.1308330288 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
17 Hb_003055_160 0.1322876634 - - PREDICTED: S-linalool synthase isoform X1 [Jatropha curcas]
18 Hb_000666_040 0.1342521041 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
19 Hb_000802_040 0.1361055237 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
20 Hb_188742_010 0.1363240537 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]

Gene co-expression network

sample Hb_001141_270 Hb_001141_270 Hb_000815_010 Hb_000815_010 Hb_001141_270--Hb_000815_010 Hb_007477_010 Hb_007477_010 Hb_001141_270--Hb_007477_010 Hb_005666_010 Hb_005666_010 Hb_001141_270--Hb_005666_010 Hb_000185_180 Hb_000185_180 Hb_001141_270--Hb_000185_180 Hb_002999_020 Hb_002999_020 Hb_001141_270--Hb_002999_020 Hb_000742_040 Hb_000742_040 Hb_001141_270--Hb_000742_040 Hb_000815_010--Hb_007477_010 Hb_000815_010--Hb_005666_010 Hb_000815_010--Hb_002999_020 Hb_000815_010--Hb_000742_040 Hb_016734_110 Hb_016734_110 Hb_000815_010--Hb_016734_110 Hb_007477_010--Hb_000185_180 Hb_003427_030 Hb_003427_030 Hb_007477_010--Hb_003427_030 Hb_002224_020 Hb_002224_020 Hb_007477_010--Hb_002224_020 Hb_007317_050 Hb_007317_050 Hb_007477_010--Hb_007317_050 Hb_005666_010--Hb_000742_040 Hb_005666_010--Hb_007317_050 Hb_164853_010 Hb_164853_010 Hb_005666_010--Hb_164853_010 Hb_012675_010 Hb_012675_010 Hb_005666_010--Hb_012675_010 Hb_005666_010--Hb_016734_110 Hb_000185_180--Hb_003427_030 Hb_000185_180--Hb_002224_020 Hb_001863_330 Hb_001863_330 Hb_000185_180--Hb_001863_330 Hb_000185_180--Hb_000815_010 Hb_174639_010 Hb_174639_010 Hb_000185_180--Hb_174639_010 Hb_153258_030 Hb_153258_030 Hb_002999_020--Hb_153258_030 Hb_002999_020--Hb_000742_040 Hb_000796_110 Hb_000796_110 Hb_002999_020--Hb_000796_110 Hb_001416_120 Hb_001416_120 Hb_002999_020--Hb_001416_120 Hb_124677_070 Hb_124677_070 Hb_002999_020--Hb_124677_070 Hb_002999_020--Hb_016734_110 Hb_000742_040--Hb_124677_070 Hb_000742_040--Hb_000796_110 Hb_000742_040--Hb_016734_110 Hb_000742_040--Hb_153258_030 Hb_000802_040 Hb_000802_040 Hb_000742_040--Hb_000802_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.82891 4.88946 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.164225 0.305377

CAGE analysis