Hb_001141_280

Information

Type -
Description -
Location Contig1141: 190546-193463
Sequence    

Annotation

kegg
ID vvi:100264876
description pentatricopeptide repeat-containing protein At4g14820
nr
ID XP_002278762.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
swissprot
ID O23337
description Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
trembl
ID D7T700
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g03630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_280 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
2 Hb_009666_040 0.063391641 - - glutathione transferase, putative [Ricinus communis]
3 Hb_001829_060 0.0728720483 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
4 Hb_003018_190 0.0730592759 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
5 Hb_001862_100 0.0738951332 - - PREDICTED: uncharacterized protein LOC105639799 isoform X2 [Jatropha curcas]
6 Hb_000239_010 0.0740578943 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_001109_020 0.0764531433 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000976_360 0.0805697046 - - PREDICTED: uncharacterized protein LOC105646237 [Jatropha curcas]
9 Hb_000046_110 0.0831312189 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
10 Hb_000377_060 0.0834769036 - - ARF GTPase activator, putative [Ricinus communis]
11 Hb_000329_310 0.085290732 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
12 Hb_000205_270 0.0890343968 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
13 Hb_000671_150 0.089782474 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
14 Hb_000753_130 0.090490262 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
15 Hb_016065_010 0.0930462882 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
16 Hb_002603_160 0.0933650793 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
17 Hb_116898_010 0.093911659 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
18 Hb_027402_070 0.0968010056 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
19 Hb_000046_290 0.097030491 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
20 Hb_131864_040 0.0974689396 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001141_280 Hb_001141_280 Hb_009666_040 Hb_009666_040 Hb_001141_280--Hb_009666_040 Hb_001829_060 Hb_001829_060 Hb_001141_280--Hb_001829_060 Hb_003018_190 Hb_003018_190 Hb_001141_280--Hb_003018_190 Hb_001862_100 Hb_001862_100 Hb_001141_280--Hb_001862_100 Hb_000239_010 Hb_000239_010 Hb_001141_280--Hb_000239_010 Hb_001109_020 Hb_001109_020 Hb_001141_280--Hb_001109_020 Hb_009666_040--Hb_001829_060 Hb_009666_040--Hb_000239_010 Hb_000205_270 Hb_000205_270 Hb_009666_040--Hb_000205_270 Hb_000329_310 Hb_000329_310 Hb_009666_040--Hb_000329_310 Hb_000979_230 Hb_000979_230 Hb_009666_040--Hb_000979_230 Hb_001829_060--Hb_001109_020 Hb_001829_060--Hb_000329_310 Hb_000046_110 Hb_000046_110 Hb_001829_060--Hb_000046_110 Hb_003927_130 Hb_003927_130 Hb_001829_060--Hb_003927_130 Hb_000751_130 Hb_000751_130 Hb_001829_060--Hb_000751_130 Hb_131864_040 Hb_131864_040 Hb_003018_190--Hb_131864_040 Hb_000997_400 Hb_000997_400 Hb_003018_190--Hb_000997_400 Hb_002603_160 Hb_002603_160 Hb_003018_190--Hb_002603_160 Hb_005488_010 Hb_005488_010 Hb_003018_190--Hb_005488_010 Hb_006846_110 Hb_006846_110 Hb_003018_190--Hb_006846_110 Hb_003938_180 Hb_003938_180 Hb_001862_100--Hb_003938_180 Hb_001862_100--Hb_001829_060 Hb_001862_100--Hb_001109_020 Hb_001862_100--Hb_000046_110 Hb_002028_130 Hb_002028_130 Hb_001862_100--Hb_002028_130 Hb_000239_010--Hb_000979_230 Hb_003226_280 Hb_003226_280 Hb_000239_010--Hb_003226_280 Hb_116898_010 Hb_116898_010 Hb_000239_010--Hb_116898_010 Hb_000239_010--Hb_000205_270 Hb_001109_020--Hb_000046_110 Hb_001109_020--Hb_003927_130 Hb_001109_020--Hb_000205_270 Hb_000883_050 Hb_000883_050 Hb_001109_020--Hb_000883_050 Hb_000086_070 Hb_000086_070 Hb_001109_020--Hb_000086_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.770381 0.195483 0.292716 0.315755 0.568157 1.27451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.14006 1.81688 2.07848 0.577904 0.337583

CAGE analysis