Hb_001141_300

Information

Type -
Description -
Location Contig1141: 202562-204126
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04255: 193682-203097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_300 0.0 - - -
2 Hb_083641_010 0.1976018792 - - SECY isoform 1 [Theobroma cacao]
3 Hb_001252_200 0.2066556934 - - PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
4 Hb_001005_150 0.2224480953 - - -
5 Hb_000087_030 0.2355276495 - - hypothetical protein JCGZ_02243 [Jatropha curcas]
6 Hb_004724_470 0.2438838796 - - Nitrilase, putative [Ricinus communis]
7 Hb_142328_010 0.2448830954 - - PREDICTED: uncharacterized protein LOC105630513 isoform X1 [Jatropha curcas]
8 Hb_011310_090 0.2477227542 - - PREDICTED: putative ATPase N2B isoform X3 [Vitis vinifera]
9 Hb_013691_010 0.24806413 - - PREDICTED: uncharacterized protein LOC103724099, partial [Phoenix dactylifera]
10 Hb_051424_010 0.2486439446 - - PREDICTED: putative methyltransferase At1g22800 [Jatropha curcas]
11 Hb_010998_030 0.2489084548 - - -
12 Hb_033363_070 0.2498270576 - - PREDICTED: LOW QUALITY PROTEIN: methionine aminopeptidase 1B, chloroplastic, partial [Populus euphratica]
13 Hb_002079_050 0.2511125718 - - hypothetical protein B456_004G182300 [Gossypium raimondii]
14 Hb_149225_010 0.2552331597 - - DNA-directed RNA polymerase II subunit rpb4, putative isoform 4, partial [Theobroma cacao]
15 Hb_000181_150 0.2611217394 - - hypothetical protein PHAVU_011G1647000g, partial [Phaseolus vulgaris]
16 Hb_000457_190 0.2620941257 - - -
17 Hb_000203_230 0.2646629743 - - PREDICTED: probable inactive dual specificity protein phosphatase-like At4g18593 [Jatropha curcas]
18 Hb_165279_010 0.2655937048 - - Kiwellin, putative [Ricinus communis]
19 Hb_000329_560 0.2656262442 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006274_040 0.2681121524 - - PREDICTED: DENN domain and WD repeat-containing protein SCD1-like [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_001141_300 Hb_001141_300 Hb_083641_010 Hb_083641_010 Hb_001141_300--Hb_083641_010 Hb_001252_200 Hb_001252_200 Hb_001141_300--Hb_001252_200 Hb_001005_150 Hb_001005_150 Hb_001141_300--Hb_001005_150 Hb_000087_030 Hb_000087_030 Hb_001141_300--Hb_000087_030 Hb_004724_470 Hb_004724_470 Hb_001141_300--Hb_004724_470 Hb_142328_010 Hb_142328_010 Hb_001141_300--Hb_142328_010 Hb_083641_010--Hb_142328_010 Hb_002079_030 Hb_002079_030 Hb_083641_010--Hb_002079_030 Hb_050912_010 Hb_050912_010 Hb_083641_010--Hb_050912_010 Hb_083641_010--Hb_004724_470 Hb_010998_030 Hb_010998_030 Hb_083641_010--Hb_010998_030 Hb_005048_140 Hb_005048_140 Hb_083641_010--Hb_005048_140 Hb_001252_200--Hb_001005_150 Hb_106415_010 Hb_106415_010 Hb_001252_200--Hb_106415_010 Hb_007083_020 Hb_007083_020 Hb_001252_200--Hb_007083_020 Hb_051424_010 Hb_051424_010 Hb_001252_200--Hb_051424_010 Hb_013691_010 Hb_013691_010 Hb_001252_200--Hb_013691_010 Hb_001252_200--Hb_000087_030 Hb_002411_130 Hb_002411_130 Hb_001005_150--Hb_002411_130 Hb_070469_010 Hb_070469_010 Hb_001005_150--Hb_070469_010 Hb_121467_010 Hb_121467_010 Hb_001005_150--Hb_121467_010 Hb_001005_150--Hb_051424_010 Hb_001005_150--Hb_000087_030 Hb_000051_170 Hb_000051_170 Hb_000087_030--Hb_000051_170 Hb_033363_070 Hb_033363_070 Hb_000087_030--Hb_033363_070 Hb_005714_130 Hb_005714_130 Hb_000087_030--Hb_005714_130 Hb_165279_010 Hb_165279_010 Hb_000087_030--Hb_165279_010 Hb_000130_190 Hb_000130_190 Hb_000087_030--Hb_000130_190 Hb_011671_090 Hb_011671_090 Hb_000087_030--Hb_011671_090 Hb_007765_070 Hb_007765_070 Hb_004724_470--Hb_007765_070 Hb_000203_230 Hb_000203_230 Hb_004724_470--Hb_000203_230 Hb_004445_040 Hb_004445_040 Hb_004724_470--Hb_004445_040 Hb_000094_290 Hb_000094_290 Hb_004724_470--Hb_000094_290 Hb_010003_010 Hb_010003_010 Hb_004724_470--Hb_010003_010 Hb_002079_050 Hb_002079_050 Hb_142328_010--Hb_002079_050 Hb_142328_010--Hb_002079_030 Hb_006810_030 Hb_006810_030 Hb_142328_010--Hb_006810_030 Hb_012194_050 Hb_012194_050 Hb_142328_010--Hb_012194_050 Hb_001898_210 Hb_001898_210 Hb_142328_010--Hb_001898_210 Hb_152202_010 Hb_152202_010 Hb_142328_010--Hb_152202_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.436293 0.239352 0.740822 1.37543 0.55838 3.94139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.270201 0.530679 0 0.220694 1.78416

CAGE analysis