Hb_001141_330

Information

Type -
Description -
Location Contig1141: 230624-233163
Sequence    

Annotation

kegg
ID pop:POPTR_0010s09690g
description POPTRDRAFT_805018; hypothetical protein
nr
ID XP_012069644.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
swissprot
ID Q0WSH6
description Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
trembl
ID A0A067L6R6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02183 PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein at4g14850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04263: 231398-232023 , PASA_asmbl_04264: 232054-232748
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_330 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
2 Hb_002026_110 0.0706987341 - - protein binding protein, putative [Ricinus communis]
3 Hb_000977_070 0.07101684 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
4 Hb_004324_280 0.0765289217 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
5 Hb_005307_030 0.081818903 - - hypothetical protein POPTR_0006s04640g [Populus trichocarpa]
6 Hb_000236_100 0.0855367107 - - Dynein alpha chain, flagellar outer arm [Gossypium arboreum]
7 Hb_000340_510 0.085962655 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
8 Hb_001538_010 0.087850721 - - -
9 Hb_004724_360 0.0880667929 - - OTU-like cysteine protease family protein [Populus trichocarpa]
10 Hb_000953_010 0.0883349727 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
11 Hb_004734_060 0.0891621685 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
12 Hb_001366_040 0.089207227 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
13 Hb_000803_190 0.0900844567 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
14 Hb_004055_040 0.0904905433 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
15 Hb_033834_010 0.0908894434 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
16 Hb_000661_050 0.0915690573 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
17 Hb_000186_280 0.0918342334 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
18 Hb_001504_160 0.0925620071 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
19 Hb_000684_420 0.0927775985 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
20 Hb_001584_170 0.0930813972 - - neutral/alkaline invertase [Manihot esculenta]

Gene co-expression network

sample Hb_001141_330 Hb_001141_330 Hb_002026_110 Hb_002026_110 Hb_001141_330--Hb_002026_110 Hb_000977_070 Hb_000977_070 Hb_001141_330--Hb_000977_070 Hb_004324_280 Hb_004324_280 Hb_001141_330--Hb_004324_280 Hb_005307_030 Hb_005307_030 Hb_001141_330--Hb_005307_030 Hb_000236_100 Hb_000236_100 Hb_001141_330--Hb_000236_100 Hb_000340_510 Hb_000340_510 Hb_001141_330--Hb_000340_510 Hb_002026_110--Hb_000340_510 Hb_017168_010 Hb_017168_010 Hb_002026_110--Hb_017168_010 Hb_000481_010 Hb_000481_010 Hb_002026_110--Hb_000481_010 Hb_002818_040 Hb_002818_040 Hb_002026_110--Hb_002818_040 Hb_029281_010 Hb_029281_010 Hb_002026_110--Hb_029281_010 Hb_001736_040 Hb_001736_040 Hb_000977_070--Hb_001736_040 Hb_001488_330 Hb_001488_330 Hb_000977_070--Hb_001488_330 Hb_000827_070 Hb_000827_070 Hb_000977_070--Hb_000827_070 Hb_000152_820 Hb_000152_820 Hb_000977_070--Hb_000152_820 Hb_000317_020 Hb_000317_020 Hb_000977_070--Hb_000317_020 Hb_000186_280 Hb_000186_280 Hb_004324_280--Hb_000186_280 Hb_001969_040 Hb_001969_040 Hb_004324_280--Hb_001969_040 Hb_004324_280--Hb_002818_040 Hb_004324_280--Hb_000340_510 Hb_000462_150 Hb_000462_150 Hb_004324_280--Hb_000462_150 Hb_010710_110 Hb_010710_110 Hb_005307_030--Hb_010710_110 Hb_002027_260 Hb_002027_260 Hb_005307_030--Hb_002027_260 Hb_000953_010 Hb_000953_010 Hb_005307_030--Hb_000953_010 Hb_005307_030--Hb_004324_280 Hb_000803_190 Hb_000803_190 Hb_005307_030--Hb_000803_190 Hb_001541_260 Hb_001541_260 Hb_000236_100--Hb_001541_260 Hb_004162_280 Hb_004162_280 Hb_000236_100--Hb_004162_280 Hb_144787_030 Hb_144787_030 Hb_000236_100--Hb_144787_030 Hb_005245_130 Hb_005245_130 Hb_000236_100--Hb_005245_130 Hb_000236_100--Hb_002027_260 Hb_010222_080 Hb_010222_080 Hb_000236_100--Hb_010222_080 Hb_000340_510--Hb_002818_040 Hb_000340_510--Hb_000481_010 Hb_000001_180 Hb_000001_180 Hb_000340_510--Hb_000001_180 Hb_000107_100 Hb_000107_100 Hb_000340_510--Hb_000107_100 Hb_000340_510--Hb_017168_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.47919 3.4606 1.24013 0.919974 5.45858 6.39522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.61213 3.52591 4.03212 1.96665 1.31065

CAGE analysis