Hb_001141_350

Information

Type -
Description -
Location Contig1141: 238854-239288
Sequence    

Annotation

kegg
ID rcu:RCOM_0912010
description Ferredoxin-1, putative
nr
ID KDP40176.1
description hypothetical protein JCGZ_02174 [Jatropha curcas]
swissprot
ID P00252
description Ferredoxin-1 OS=Desmonostoc muscorum PE=1 SV=2
trembl
ID A0A067KVE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02174 PE=4 SV=1
Gene Ontology
ID GO:0009055
description root r-b2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 015_O16.ab1: 238867-239461

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_350 0.0 - - hypothetical protein JCGZ_02174 [Jatropha curcas]
2 Hb_000836_090 0.1088617565 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
3 Hb_000062_130 0.1118497249 - - cytochrome P450, putative [Ricinus communis]
4 Hb_001936_190 0.1126097784 - - hypothetical protein JCGZ_17780 [Jatropha curcas]
5 Hb_000645_260 0.1163548207 - - PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
6 Hb_000181_330 0.1170605504 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
7 Hb_000465_020 0.1172221566 - - PREDICTED: uncharacterized protein LOC105632280 [Jatropha curcas]
8 Hb_000049_280 0.1178483959 - - PREDICTED: ribokinase-like isoform X4 [Jatropha curcas]
9 Hb_000032_360 0.1246472375 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Jatropha curcas]
10 Hb_004531_170 0.1267364641 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
11 Hb_000982_100 0.1268637801 transcription factor TF Family: bHLH PREDICTED: transcription factor PIF1-like isoform X1 [Jatropha curcas]
12 Hb_000322_030 0.1270034896 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
13 Hb_093077_010 0.1288161145 transcription factor TF Family: G2-like PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
14 Hb_033006_020 0.1306028669 - - Aspartate aminotransferase, putative [Ricinus communis]
15 Hb_000243_060 0.1315377196 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
16 Hb_001221_060 0.1318227306 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
17 Hb_000922_160 0.132379383 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis]
18 Hb_000227_400 0.1331191707 - - lipoxygenase, putative [Ricinus communis]
19 Hb_004447_050 0.1351759703 - - PREDICTED: high-light-induced protein, chloroplastic [Jatropha curcas]
20 Hb_014720_140 0.1360766008 - - PREDICTED: uncharacterized protein LOC105640367 [Jatropha curcas]

Gene co-expression network

sample Hb_001141_350 Hb_001141_350 Hb_000836_090 Hb_000836_090 Hb_001141_350--Hb_000836_090 Hb_000062_130 Hb_000062_130 Hb_001141_350--Hb_000062_130 Hb_001936_190 Hb_001936_190 Hb_001141_350--Hb_001936_190 Hb_000645_260 Hb_000645_260 Hb_001141_350--Hb_000645_260 Hb_000181_330 Hb_000181_330 Hb_001141_350--Hb_000181_330 Hb_000465_020 Hb_000465_020 Hb_001141_350--Hb_000465_020 Hb_033006_020 Hb_033006_020 Hb_000836_090--Hb_033006_020 Hb_002053_180 Hb_002053_180 Hb_000836_090--Hb_002053_180 Hb_007130_020 Hb_007130_020 Hb_000836_090--Hb_007130_020 Hb_000905_100 Hb_000905_100 Hb_000836_090--Hb_000905_100 Hb_000002_370 Hb_000002_370 Hb_000836_090--Hb_000002_370 Hb_000199_040 Hb_000199_040 Hb_000836_090--Hb_000199_040 Hb_000062_130--Hb_000836_090 Hb_000062_130--Hb_033006_020 Hb_000062_130--Hb_000181_330 Hb_000062_130--Hb_001936_190 Hb_000243_060 Hb_000243_060 Hb_000062_130--Hb_000243_060 Hb_000922_160 Hb_000922_160 Hb_001936_190--Hb_000922_160 Hb_028008_040 Hb_028008_040 Hb_001936_190--Hb_028008_040 Hb_005725_240 Hb_005725_240 Hb_001936_190--Hb_005725_240 Hb_004531_170 Hb_004531_170 Hb_001936_190--Hb_004531_170 Hb_003580_050 Hb_003580_050 Hb_001936_190--Hb_003580_050 Hb_005365_010 Hb_005365_010 Hb_001936_190--Hb_005365_010 Hb_000982_100 Hb_000982_100 Hb_000645_260--Hb_000982_100 Hb_001269_060 Hb_001269_060 Hb_000645_260--Hb_001269_060 Hb_014720_140 Hb_014720_140 Hb_000645_260--Hb_014720_140 Hb_000302_360 Hb_000302_360 Hb_000645_260--Hb_000302_360 Hb_000645_260--Hb_033006_020 Hb_001377_120 Hb_001377_120 Hb_000645_260--Hb_001377_120 Hb_000181_330--Hb_000243_060 Hb_000322_030 Hb_000322_030 Hb_000181_330--Hb_000322_030 Hb_002311_280 Hb_002311_280 Hb_000181_330--Hb_002311_280 Hb_000272_030 Hb_000272_030 Hb_000181_330--Hb_000272_030 Hb_000181_330--Hb_004531_170 Hb_000173_270 Hb_000173_270 Hb_000181_330--Hb_000173_270 Hb_002078_390 Hb_002078_390 Hb_000465_020--Hb_002078_390 Hb_001221_060 Hb_001221_060 Hb_000465_020--Hb_001221_060 Hb_000465_020--Hb_000836_090 Hb_000465_020--Hb_033006_020 Hb_005568_020 Hb_005568_020 Hb_000465_020--Hb_005568_020 Hb_128196_010 Hb_128196_010 Hb_000465_020--Hb_128196_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.71865 23.7675 75.1463 44.7697 3.3849 4.01016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.62541 0.957555 0 5.82411 53.9499

CAGE analysis