Hb_001141_360

Information

Type -
Description -
Location Contig1141: 240148-245110
Sequence    

Annotation

kegg
ID pop:POPTR_0008s15290g
description POPTRDRAFT_419249; hydroxyproline-rich glycoprotein
nr
ID XP_012069629.1
description PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
swissprot
ID Q9LUV4
description FRIGIDA-like protein 4a OS=Arabidopsis thaliana GN=FRL4A PE=2 SV=1
trembl
ID A0A067L6Q2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02173 PE=4 SV=1
Gene Ontology
ID GO:0005840
description frigida-like protein 4a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04270: 240061-244822
cDNA
(Sanger)
(ID:Location)		 011_A06.ab1: 244017-244817 , 013_K07.ab1: 244042-244810 , 013_N17.ab1: 244053-244810 , 013_O14.ab1: 244222-244800 , 017_A16.ab1: 244153-244810 , 026_A14.ab1: 244042-244814 , 030_N05.ab1: 244127-244817 , 031_C18.ab1: 244012-244814 , 032_I17.ab1: 244049-244814 , 042_N09.ab1: 244012-244814 , 044_N21.ab1: 244044-244832 , 047_J11.ab1: 244069-244814 , 047_L23.ab1: 244044-244814

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_360 0.0 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
2 Hb_001865_060 0.0809592471 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
3 Hb_003494_060 0.0836466125 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
4 Hb_000062_080 0.113622377 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
5 Hb_003120_050 0.1138540156 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
6 Hb_012725_040 0.1192328553 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
7 Hb_012226_010 0.1212762181 - - PREDICTED: protein DGCR14 [Jatropha curcas]
8 Hb_004800_190 0.1243157501 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
9 Hb_002485_040 0.1294517579 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
10 Hb_009838_060 0.1315918754 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000123_350 0.1325584793 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
12 Hb_000465_080 0.1362661783 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
13 Hb_009897_020 0.1366780348 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
14 Hb_002235_240 0.1384344211 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
15 Hb_000010_350 0.1389564535 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
16 Hb_001863_150 0.141474195 - - VQ motif-containing family protein [Populus trichocarpa]
17 Hb_003849_260 0.1426245063 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
18 Hb_004218_090 0.1436360121 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
19 Hb_042175_010 0.1451667647 - - hypothetical protein CISIN_1g0016721mg, partial [Citrus sinensis]
20 Hb_127599_010 0.1456488609 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_001141_360 Hb_001141_360 Hb_001865_060 Hb_001865_060 Hb_001141_360--Hb_001865_060 Hb_003494_060 Hb_003494_060 Hb_001141_360--Hb_003494_060 Hb_000062_080 Hb_000062_080 Hb_001141_360--Hb_000062_080 Hb_003120_050 Hb_003120_050 Hb_001141_360--Hb_003120_050 Hb_012725_040 Hb_012725_040 Hb_001141_360--Hb_012725_040 Hb_012226_010 Hb_012226_010 Hb_001141_360--Hb_012226_010 Hb_001865_060--Hb_012725_040 Hb_001865_060--Hb_000062_080 Hb_002485_040 Hb_002485_040 Hb_001865_060--Hb_002485_040 Hb_001865_060--Hb_003494_060 Hb_004032_310 Hb_004032_310 Hb_001865_060--Hb_004032_310 Hb_003494_060--Hb_012725_040 Hb_000483_040 Hb_000483_040 Hb_003494_060--Hb_000483_040 Hb_009838_060 Hb_009838_060 Hb_003494_060--Hb_009838_060 Hb_003494_060--Hb_000062_080 Hb_127599_010 Hb_127599_010 Hb_000062_080--Hb_127599_010 Hb_000448_060 Hb_000448_060 Hb_000062_080--Hb_000448_060 Hb_000802_190 Hb_000802_190 Hb_000062_080--Hb_000802_190 Hb_000010_350 Hb_000010_350 Hb_000062_080--Hb_000010_350 Hb_000465_080 Hb_000465_080 Hb_003120_050--Hb_000465_080 Hb_028207_040 Hb_028207_040 Hb_003120_050--Hb_028207_040 Hb_003120_050--Hb_003494_060 Hb_003120_050--Hb_001865_060 Hb_000084_240 Hb_000084_240 Hb_003120_050--Hb_000084_240 Hb_185513_010 Hb_185513_010 Hb_012725_040--Hb_185513_010 Hb_006111_030 Hb_006111_030 Hb_012725_040--Hb_006111_030 Hb_001258_150 Hb_001258_150 Hb_012725_040--Hb_001258_150 Hb_000340_110 Hb_000340_110 Hb_012226_010--Hb_000340_110 Hb_003125_030 Hb_003125_030 Hb_012226_010--Hb_003125_030 Hb_029223_050 Hb_029223_050 Hb_012226_010--Hb_029223_050 Hb_104265_030 Hb_104265_030 Hb_012226_010--Hb_104265_030 Hb_001511_110 Hb_001511_110 Hb_012226_010--Hb_001511_110 Hb_026198_040 Hb_026198_040 Hb_012226_010--Hb_026198_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
280.998 1819.35 251.005 168.629 299.434 304.417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
155.427 163.504 152.118 261.178 135.107

CAGE analysis