Hb_001141_370

Information

Type -
Description -
Location Contig1141: 269032-278105
Sequence    

Annotation

kegg
ID rcu:RCOM_0912140
description hypothetical protein
nr
ID XP_012069628.1
description PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
swissprot
ID Q2QWE9
description Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. japonica GN=SGS3 PE=3 SV=1
trembl
ID A0A067L7X0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02172 PE=4 SV=1
Gene Ontology
ID GO:0031047
description protein suppressor of gene silencing 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04273: 269212-277681 , PASA_asmbl_04276: 273641-274010 , PASA_asmbl_04280: 276207-276350 , PASA_asmbl_04281: 272420-272911
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_370 0.0 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
2 Hb_000544_060 0.046695767 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
3 Hb_000236_220 0.0694824642 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
4 Hb_001243_060 0.0740885493 - - PREDICTED: probable magnesium transporter NIPA6 [Jatropha curcas]
5 Hb_009771_100 0.0773746149 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
6 Hb_000340_110 0.0785411412 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
7 Hb_003858_090 0.0808663751 - - Filamin-A-interacting protein, putative [Ricinus communis]
8 Hb_001902_060 0.0815518291 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
9 Hb_000753_100 0.0816748063 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
10 Hb_000152_340 0.0826254289 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
11 Hb_000661_200 0.0827906953 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
12 Hb_005260_010 0.0828816168 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
13 Hb_000260_640 0.0834656378 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
14 Hb_007193_110 0.0843370896 - - PREDICTED: E3 ubiquitin-protein ligase RNF14 [Jatropha curcas]
15 Hb_004480_040 0.0846612653 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
16 Hb_005104_010 0.0856671897 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
17 Hb_001511_110 0.0860890202 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
18 Hb_029223_050 0.0868392712 - - PREDICTED: uncharacterized protein LOC105642267 isoform X1 [Jatropha curcas]
19 Hb_000556_170 0.0868888065 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
20 Hb_012114_050 0.0870617394 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001141_370 Hb_001141_370 Hb_000544_060 Hb_000544_060 Hb_001141_370--Hb_000544_060 Hb_000236_220 Hb_000236_220 Hb_001141_370--Hb_000236_220 Hb_001243_060 Hb_001243_060 Hb_001141_370--Hb_001243_060 Hb_009771_100 Hb_009771_100 Hb_001141_370--Hb_009771_100 Hb_000340_110 Hb_000340_110 Hb_001141_370--Hb_000340_110 Hb_003858_090 Hb_003858_090 Hb_001141_370--Hb_003858_090 Hb_000661_200 Hb_000661_200 Hb_000544_060--Hb_000661_200 Hb_052764_060 Hb_052764_060 Hb_000544_060--Hb_052764_060 Hb_006663_040 Hb_006663_040 Hb_000544_060--Hb_006663_040 Hb_001902_060 Hb_001902_060 Hb_000544_060--Hb_001902_060 Hb_000832_320 Hb_000832_320 Hb_000544_060--Hb_000832_320 Hb_093084_070 Hb_093084_070 Hb_000236_220--Hb_093084_070 Hb_003373_040 Hb_003373_040 Hb_000236_220--Hb_003373_040 Hb_004480_040 Hb_004480_040 Hb_000236_220--Hb_004480_040 Hb_005260_010 Hb_005260_010 Hb_000236_220--Hb_005260_010 Hb_000441_070 Hb_000441_070 Hb_000236_220--Hb_000441_070 Hb_000116_060 Hb_000116_060 Hb_001243_060--Hb_000116_060 Hb_009780_100 Hb_009780_100 Hb_001243_060--Hb_009780_100 Hb_000230_430 Hb_000230_430 Hb_001243_060--Hb_000230_430 Hb_000331_330 Hb_000331_330 Hb_001243_060--Hb_000331_330 Hb_001243_060--Hb_003858_090 Hb_031711_010 Hb_031711_010 Hb_009771_100--Hb_031711_010 Hb_009771_100--Hb_009780_100 Hb_011909_060 Hb_011909_060 Hb_009771_100--Hb_011909_060 Hb_000457_050 Hb_000457_050 Hb_009771_100--Hb_000457_050 Hb_000061_490 Hb_000061_490 Hb_009771_100--Hb_000061_490 Hb_029223_050 Hb_029223_050 Hb_000340_110--Hb_029223_050 Hb_001511_110 Hb_001511_110 Hb_000340_110--Hb_001511_110 Hb_000340_110--Hb_000544_060 Hb_026198_040 Hb_026198_040 Hb_000340_110--Hb_026198_040 Hb_144824_010 Hb_144824_010 Hb_000340_110--Hb_144824_010 Hb_015475_020 Hb_015475_020 Hb_003858_090--Hb_015475_020 Hb_001221_160 Hb_001221_160 Hb_003858_090--Hb_001221_160 Hb_000753_100 Hb_000753_100 Hb_003858_090--Hb_000753_100 Hb_000152_340 Hb_000152_340 Hb_003858_090--Hb_000152_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.4372 67.8907 22.1924 18.1804 43.0546 35.6673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.3313 14.4519 15.7325 20.8059 15.8143

CAGE analysis