Hb_001141_380

Information

Type -
Description -
Location Contig1141: 278217-279707
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa012823mg
description hypothetical protein
nr
ID XP_007223665.1
description hypothetical protein PRUPE_ppa012823mg [Prunus persica]
swissprot
ID Q9ZVZ9
description Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana GN=PSB27-2 PE=1 SV=1
trembl
ID M5XFY8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012823mg PE=3 SV=1
Gene Ontology
ID GO:0006098
description photosystem ii d1 precursor processing protein psb27- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04282: 278290-278816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_380 0.0 - - hypothetical protein PRUPE_ppa012823mg [Prunus persica]
2 Hb_001959_070 0.101527402 - - PREDICTED: uncharacterized protein LOC105638451 isoform X1 [Jatropha curcas]
3 Hb_002205_070 0.1030076759 - - PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1 [Jatropha curcas]
4 Hb_000877_020 0.1052538579 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
5 Hb_001789_070 0.1056659238 - - PREDICTED: probable prolyl 4-hydroxylase 12 [Jatropha curcas]
6 Hb_000120_760 0.1112607801 transcription factor TF Family: HMG PREDICTED: HMG1/2-like protein [Populus euphratica]
7 Hb_002616_050 0.1113090087 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
8 Hb_008554_070 0.1113669674 - - PREDICTED: peroxisome biogenesis protein 3-2 isoform X2 [Jatropha curcas]
9 Hb_024714_010 0.1126870723 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
10 Hb_001053_180 0.1138802805 - - protein binding protein, putative [Ricinus communis]
11 Hb_005306_170 0.1145299197 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
12 Hb_117134_010 0.1158712319 - - PREDICTED: 14 kDa zinc-binding protein isoform X1 [Jatropha curcas]
13 Hb_000236_070 0.116836231 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000300_610 0.1182359654 - - cytosolic copper/zinc superoxide dismutase [Hevea brasiliensis]
15 Hb_000529_190 0.1189898461 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
16 Hb_002214_040 0.1196649668 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
17 Hb_071130_030 0.1215158359 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
18 Hb_024682_010 0.121617902 - - sterol isomerase, putative [Ricinus communis]
19 Hb_000815_040 0.1228088892 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
20 Hb_118707_030 0.1229890775 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_001141_380 Hb_001141_380 Hb_001959_070 Hb_001959_070 Hb_001141_380--Hb_001959_070 Hb_002205_070 Hb_002205_070 Hb_001141_380--Hb_002205_070 Hb_000877_020 Hb_000877_020 Hb_001141_380--Hb_000877_020 Hb_001789_070 Hb_001789_070 Hb_001141_380--Hb_001789_070 Hb_000120_760 Hb_000120_760 Hb_001141_380--Hb_000120_760 Hb_002616_050 Hb_002616_050 Hb_001141_380--Hb_002616_050 Hb_001348_180 Hb_001348_180 Hb_001959_070--Hb_001348_180 Hb_000173_290 Hb_000173_290 Hb_001959_070--Hb_000173_290 Hb_001100_060 Hb_001100_060 Hb_001959_070--Hb_001100_060 Hb_001959_070--Hb_002205_070 Hb_004837_030 Hb_004837_030 Hb_001959_070--Hb_004837_030 Hb_000236_070 Hb_000236_070 Hb_001959_070--Hb_000236_070 Hb_118707_030 Hb_118707_030 Hb_002205_070--Hb_118707_030 Hb_000107_620 Hb_000107_620 Hb_002205_070--Hb_000107_620 Hb_009838_080 Hb_009838_080 Hb_002205_070--Hb_009838_080 Hb_002205_070--Hb_000236_070 Hb_017904_010 Hb_017904_010 Hb_002205_070--Hb_017904_010 Hb_006541_030 Hb_006541_030 Hb_002205_070--Hb_006541_030 Hb_094608_010 Hb_094608_010 Hb_000877_020--Hb_094608_010 Hb_001117_090 Hb_001117_090 Hb_000877_020--Hb_001117_090 Hb_000483_410 Hb_000483_410 Hb_000877_020--Hb_000483_410 Hb_024714_010 Hb_024714_010 Hb_000877_020--Hb_024714_010 Hb_012725_050 Hb_012725_050 Hb_000877_020--Hb_012725_050 Hb_002214_040 Hb_002214_040 Hb_000877_020--Hb_002214_040 Hb_000529_190 Hb_000529_190 Hb_001789_070--Hb_000529_190 Hb_012799_160 Hb_012799_160 Hb_001789_070--Hb_012799_160 Hb_025240_040 Hb_025240_040 Hb_001789_070--Hb_025240_040 Hb_000103_090 Hb_000103_090 Hb_001789_070--Hb_000103_090 Hb_003125_010 Hb_003125_010 Hb_001789_070--Hb_003125_010 Hb_001789_070--Hb_002214_040 Hb_032202_090 Hb_032202_090 Hb_000120_760--Hb_032202_090 Hb_001604_080 Hb_001604_080 Hb_000120_760--Hb_001604_080 Hb_168054_010 Hb_168054_010 Hb_000120_760--Hb_168054_010 Hb_000887_020 Hb_000887_020 Hb_000120_760--Hb_000887_020 Hb_010180_020 Hb_010180_020 Hb_000120_760--Hb_010180_020 Hb_000676_290 Hb_000676_290 Hb_000120_760--Hb_000676_290 Hb_000363_500 Hb_000363_500 Hb_002616_050--Hb_000363_500 Hb_000023_140 Hb_000023_140 Hb_002616_050--Hb_000023_140 Hb_004072_020 Hb_004072_020 Hb_002616_050--Hb_004072_020 Hb_005063_040 Hb_005063_040 Hb_002616_050--Hb_005063_040 Hb_003001_120 Hb_003001_120 Hb_002616_050--Hb_003001_120 Hb_000889_020 Hb_000889_020 Hb_002616_050--Hb_000889_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.15232 0.383759 1.8613 1.42113 1.90401 4.90513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.01282 3.93886 2.99811 1.36087 2.61563

CAGE analysis