Hb_001141_400

Information

Type -
Description -
Location Contig1141: 290800-293132
Sequence    

Annotation

kegg
ID cmo:103501059
description uncharacterized LOC103501059
nr
ID KJB46658.1
description hypothetical protein B456_007G2854002, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0A9RV69
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_400 0.0 - - hypothetical protein B456_007G2854002, partial [Gossypium raimondii]
2 Hb_000373_300 0.1539355832 - - hypothetical protein F775_20382 [Aegilops tauschii]
3 Hb_002742_010 0.1572510418 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
4 Hb_028365_010 0.1864791828 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
5 Hb_010128_110 0.1937112194 - - PREDICTED: uncharacterized protein LOC105632071 [Jatropha curcas]
6 Hb_188382_010 0.196604501 - - Ran GTPase binding protein, putative [Ricinus communis]
7 Hb_159085_010 0.2049039411 - - -
8 Hb_003023_050 0.2074405896 - - hypothetical protein POPTR_0013s10320g [Populus trichocarpa]
9 Hb_000861_050 0.2113143904 - - PREDICTED: transcription elongation factor SPT6-like isoform X1 [Populus euphratica]
10 Hb_000922_180 0.211882406 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO5 [Jatropha curcas]
11 Hb_001186_050 0.2259383861 - - -
12 Hb_001143_010 0.2283139641 - - -
13 Hb_000445_330 0.2330047687 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002843_190 0.2347876376 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 7 isoform X1 [Jatropha curcas]
15 Hb_002835_220 0.2359766166 - - PREDICTED: MATE efflux family protein 7 [Vitis vinifera]
16 Hb_035905_010 0.2406610816 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
17 Hb_004055_060 0.2421833521 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
18 Hb_000046_020 0.2425900273 - - -
19 Hb_003992_120 0.243564503 - - hypothetical protein MTR_6g089560 [Medicago truncatula]
20 Hb_002233_110 0.2439448046 - - PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]

Gene co-expression network

sample Hb_001141_400 Hb_001141_400 Hb_000373_300 Hb_000373_300 Hb_001141_400--Hb_000373_300 Hb_002742_010 Hb_002742_010 Hb_001141_400--Hb_002742_010 Hb_028365_010 Hb_028365_010 Hb_001141_400--Hb_028365_010 Hb_010128_110 Hb_010128_110 Hb_001141_400--Hb_010128_110 Hb_188382_010 Hb_188382_010 Hb_001141_400--Hb_188382_010 Hb_159085_010 Hb_159085_010 Hb_001141_400--Hb_159085_010 Hb_000373_300--Hb_002742_010 Hb_002741_030 Hb_002741_030 Hb_000373_300--Hb_002741_030 Hb_000861_050 Hb_000861_050 Hb_000373_300--Hb_000861_050 Hb_001143_010 Hb_001143_010 Hb_000373_300--Hb_001143_010 Hb_000373_300--Hb_159085_010 Hb_000329_530 Hb_000329_530 Hb_002742_010--Hb_000329_530 Hb_002742_010--Hb_188382_010 Hb_002742_010--Hb_028365_010 Hb_003023_050 Hb_003023_050 Hb_002742_010--Hb_003023_050 Hb_028365_010--Hb_003023_050 Hb_012779_110 Hb_012779_110 Hb_028365_010--Hb_012779_110 Hb_005410_030 Hb_005410_030 Hb_028365_010--Hb_005410_030 Hb_002843_190 Hb_002843_190 Hb_028365_010--Hb_002843_190 Hb_001109_120 Hb_001109_120 Hb_028365_010--Hb_001109_120 Hb_002221_080 Hb_002221_080 Hb_028365_010--Hb_002221_080 Hb_010128_110--Hb_002843_190 Hb_001631_080 Hb_001631_080 Hb_010128_110--Hb_001631_080 Hb_000175_040 Hb_000175_040 Hb_010128_110--Hb_000175_040 Hb_010128_110--Hb_028365_010 Hb_003756_010 Hb_003756_010 Hb_010128_110--Hb_003756_010 Hb_015675_060 Hb_015675_060 Hb_188382_010--Hb_015675_060 Hb_039548_010 Hb_039548_010 Hb_188382_010--Hb_039548_010 Hb_030765_010 Hb_030765_010 Hb_188382_010--Hb_030765_010 Hb_029982_010 Hb_029982_010 Hb_188382_010--Hb_029982_010 Hb_000562_080 Hb_000562_080 Hb_188382_010--Hb_000562_080 Hb_039305_010 Hb_039305_010 Hb_159085_010--Hb_039305_010 Hb_000736_010 Hb_000736_010 Hb_159085_010--Hb_000736_010 Hb_003773_030 Hb_003773_030 Hb_159085_010--Hb_003773_030 Hb_000067_020 Hb_000067_020 Hb_159085_010--Hb_000067_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.08244 0 0 0 0.520076 0.549673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.44256 1.45284 0 0 0

CAGE analysis