Hb_001141_420

Information

Type -
Description -
Location Contig1141: 308164-312716
Sequence    

Annotation

kegg
ID rcu:RCOM_0912250
description 5'-nucleotidase surE, putative (EC:3.1.3.5)
nr
ID XP_012069616.1
description PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
swissprot
ID Q2RJD1
description 5'-nucleotidase SurE OS=Moorella thermoacetica (strain ATCC 39073) GN=surE PE=3 SV=1
trembl
ID A0A067KVJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02165 PE=3 SV=1
Gene Ontology
ID GO:0005829
description 5 -nucleotidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04287: 308151-313051
cDNA
(Sanger)
(ID:Location)		 002_O04.ab1: 308151-310725 , 013_P23.ab1: 308151-310675 , 021_N07.ab1: 308151-310705 , 037_O23.ab1: 308151-310661

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_420 0.0 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
2 Hb_000603_160 0.0726451762 - - PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
3 Hb_023371_020 0.0734060244 - - PREDICTED: uncharacterized protein LOC105633512 [Jatropha curcas]
4 Hb_005563_070 0.0802421558 - - PREDICTED: uncharacterized protein LOC105630108 [Jatropha curcas]
5 Hb_003058_120 0.0847049382 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
6 Hb_000220_100 0.0848199915 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
7 Hb_168978_010 0.0858310499 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
8 Hb_004157_050 0.087923692 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
9 Hb_002301_150 0.0887430246 - - Drought-responsive family protein [Theobroma cacao]
10 Hb_004607_090 0.0909947677 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
11 Hb_000029_140 0.0929239828 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]
12 Hb_189216_010 0.0930332418 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
13 Hb_023313_030 0.0931826866 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004108_220 0.0933434177 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
15 Hb_003878_090 0.0933916181 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
16 Hb_011218_090 0.0933980228 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
17 Hb_000365_270 0.0937699262 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
18 Hb_004705_170 0.0942655921 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
19 Hb_000359_060 0.0944855965 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
20 Hb_007472_070 0.0945233509 - - cir, putative [Ricinus communis]

Gene co-expression network

sample Hb_001141_420 Hb_001141_420 Hb_000603_160 Hb_000603_160 Hb_001141_420--Hb_000603_160 Hb_023371_020 Hb_023371_020 Hb_001141_420--Hb_023371_020 Hb_005563_070 Hb_005563_070 Hb_001141_420--Hb_005563_070 Hb_003058_120 Hb_003058_120 Hb_001141_420--Hb_003058_120 Hb_000220_100 Hb_000220_100 Hb_001141_420--Hb_000220_100 Hb_168978_010 Hb_168978_010 Hb_001141_420--Hb_168978_010 Hb_000603_160--Hb_005563_070 Hb_002572_020 Hb_002572_020 Hb_000603_160--Hb_002572_020 Hb_189216_010 Hb_189216_010 Hb_000603_160--Hb_189216_010 Hb_000365_270 Hb_000365_270 Hb_000603_160--Hb_000365_270 Hb_004607_090 Hb_004607_090 Hb_000603_160--Hb_004607_090 Hb_003878_090 Hb_003878_090 Hb_023371_020--Hb_003878_090 Hb_004545_110 Hb_004545_110 Hb_023371_020--Hb_004545_110 Hb_004157_050 Hb_004157_050 Hb_023371_020--Hb_004157_050 Hb_133702_010 Hb_133702_010 Hb_023371_020--Hb_133702_010 Hb_000260_350 Hb_000260_350 Hb_023371_020--Hb_000260_350 Hb_005563_070--Hb_189216_010 Hb_000704_030 Hb_000704_030 Hb_005563_070--Hb_000704_030 Hb_005162_090 Hb_005162_090 Hb_005563_070--Hb_005162_090 Hb_005563_070--Hb_002572_020 Hb_000853_150 Hb_000853_150 Hb_003058_120--Hb_000853_150 Hb_005588_060 Hb_005588_060 Hb_003058_120--Hb_005588_060 Hb_023001_040 Hb_023001_040 Hb_003058_120--Hb_023001_040 Hb_000392_420 Hb_000392_420 Hb_003058_120--Hb_000392_420 Hb_000167_010 Hb_000167_010 Hb_003058_120--Hb_000167_010 Hb_003058_120--Hb_004157_050 Hb_000359_060 Hb_000359_060 Hb_000220_100--Hb_000359_060 Hb_000173_410 Hb_000173_410 Hb_000220_100--Hb_000173_410 Hb_002045_070 Hb_002045_070 Hb_000220_100--Hb_002045_070 Hb_000608_050 Hb_000608_050 Hb_000220_100--Hb_000608_050 Hb_000454_090 Hb_000454_090 Hb_000220_100--Hb_000454_090 Hb_033594_080 Hb_033594_080 Hb_000220_100--Hb_033594_080 Hb_001511_060 Hb_001511_060 Hb_168978_010--Hb_001511_060 Hb_168978_010--Hb_000359_060 Hb_168978_010--Hb_000260_350 Hb_093458_040 Hb_093458_040 Hb_168978_010--Hb_093458_040 Hb_149985_010 Hb_149985_010 Hb_168978_010--Hb_149985_010 Hb_000030_030 Hb_000030_030 Hb_168978_010--Hb_000030_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2639 19.6157 24.0674 38.4993 12.7151 11.2267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.6613 21.5085 18.4489 19.4844 21.8598

CAGE analysis