Hb_001141_470

Information

Type -
Description -
Location Contig1141: 337367-346076
Sequence    

Annotation

kegg
ID sly:101254423
description uncharacterized LOC101254423
nr
ID XP_010326653.1
description PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
swissprot
ID Q43077
description Primary amine oxidase OS=Pisum sativum PE=1 SV=1
trembl
ID A5BR05
description Amine oxidase OS=Vitis vinifera GN=VITISV_040530 PE=3 SV=1
Gene Ontology
ID GO:0005618
description amine oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04293: 341983-343393 , PASA_asmbl_04294: 342731-345272 , PASA_asmbl_04295: 345550-346052
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_470 0.0 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
2 Hb_005455_070 0.0794626861 - - hypothetical protein POPTR_0001s04440g [Populus trichocarpa]
3 Hb_055335_010 0.0869623384 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
4 Hb_012522_030 0.1022743637 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_002326_030 0.1027174564 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
6 Hb_010174_120 0.1051739016 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
7 Hb_000419_040 0.1088703719 - - chorismate synthase [Hevea brasiliensis]
8 Hb_017124_010 0.1093765405 - - conserved hypothetical protein [Ricinus communis]
9 Hb_171554_080 0.110180693 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
10 Hb_004800_160 0.1112348305 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
11 Hb_001315_020 0.1122220761 - - ring finger protein, putative [Ricinus communis]
12 Hb_001981_090 0.1126222436 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
13 Hb_000861_040 0.1127915511 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
14 Hb_001478_050 0.1135006267 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
15 Hb_008695_190 0.1162590137 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
16 Hb_002291_030 0.1200203964 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
17 Hb_001606_070 0.1209726405 - - fimbrin, putative [Ricinus communis]
18 Hb_000957_040 0.1232926715 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
19 Hb_010402_010 0.1278800809 - - BnaC06g23470D [Brassica napus]
20 Hb_024952_010 0.129112768 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001141_470 Hb_001141_470 Hb_005455_070 Hb_005455_070 Hb_001141_470--Hb_005455_070 Hb_055335_010 Hb_055335_010 Hb_001141_470--Hb_055335_010 Hb_012522_030 Hb_012522_030 Hb_001141_470--Hb_012522_030 Hb_002326_030 Hb_002326_030 Hb_001141_470--Hb_002326_030 Hb_010174_120 Hb_010174_120 Hb_001141_470--Hb_010174_120 Hb_000419_040 Hb_000419_040 Hb_001141_470--Hb_000419_040 Hb_005455_070--Hb_002326_030 Hb_001478_050 Hb_001478_050 Hb_005455_070--Hb_001478_050 Hb_008695_190 Hb_008695_190 Hb_005455_070--Hb_008695_190 Hb_001473_130 Hb_001473_130 Hb_005455_070--Hb_001473_130 Hb_001981_090 Hb_001981_090 Hb_005455_070--Hb_001981_090 Hb_001315_020 Hb_001315_020 Hb_055335_010--Hb_001315_020 Hb_006070_010 Hb_006070_010 Hb_055335_010--Hb_006070_010 Hb_055335_010--Hb_005455_070 Hb_002027_300 Hb_002027_300 Hb_055335_010--Hb_002027_300 Hb_000957_040 Hb_000957_040 Hb_055335_010--Hb_000957_040 Hb_002387_060 Hb_002387_060 Hb_012522_030--Hb_002387_060 Hb_012522_030--Hb_002326_030 Hb_002291_030 Hb_002291_030 Hb_012522_030--Hb_002291_030 Hb_001711_030 Hb_001711_030 Hb_012522_030--Hb_001711_030 Hb_012522_030--Hb_000419_040 Hb_002282_020 Hb_002282_020 Hb_012522_030--Hb_002282_020 Hb_000861_040 Hb_000861_040 Hb_002326_030--Hb_000861_040 Hb_000173_170 Hb_000173_170 Hb_002326_030--Hb_000173_170 Hb_002326_030--Hb_001473_130 Hb_007229_060 Hb_007229_060 Hb_002326_030--Hb_007229_060 Hb_000387_080 Hb_000387_080 Hb_010174_120--Hb_000387_080 Hb_000538_210 Hb_000538_210 Hb_010174_120--Hb_000538_210 Hb_001017_090 Hb_001017_090 Hb_010174_120--Hb_001017_090 Hb_010402_010 Hb_010402_010 Hb_010174_120--Hb_010402_010 Hb_001476_100 Hb_001476_100 Hb_010174_120--Hb_001476_100 Hb_010174_130 Hb_010174_130 Hb_010174_120--Hb_010174_130 Hb_002936_050 Hb_002936_050 Hb_000419_040--Hb_002936_050 Hb_009265_060 Hb_009265_060 Hb_000419_040--Hb_009265_060 Hb_001863_480 Hb_001863_480 Hb_000419_040--Hb_001863_480 Hb_171554_080 Hb_171554_080 Hb_000419_040--Hb_171554_080 Hb_000345_030 Hb_000345_030 Hb_000419_040--Hb_000345_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.6454 1.26563 1.02032 2.66553 8.40122 11.5515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.6422 11.6514 25.2639 3.2978 1.68982

CAGE analysis