Hb_001143_070

Information

Type -
Description -
Location Contig1143: 70310-71507
Sequence    

Annotation

kegg
ID tcc:TCM_035133
description Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1
nr
ID XP_007019086.1
description Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
swissprot
ID Q9CAQ2
description Acetyltransferase At1g77540 OS=Arabidopsis thaliana GN=At1g77540 PE=1 SV=2
trembl
ID A0A061FGX1
description Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_035133 PE=4 SV=1
Gene Ontology
ID GO:0016746
description acetyltransferase at1g77540

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04320: 70381-71363
cDNA
(Sanger)
(ID:Location)		 013_L20.ab1: 70459-71328

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001143_070 0.0 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
2 Hb_002989_040 0.123710127 - - hypothetical protein 1 [Hevea brasiliensis]
3 Hb_000103_030 0.130175638 - - hypothetical protein VITISV_021700 [Vitis vinifera]
4 Hb_001348_230 0.1399552663 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
5 Hb_002290_050 0.1404987917 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004942_020 0.1405291483 - - Potassium transporter, putative [Ricinus communis]
7 Hb_000352_160 0.1445255586 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001425_070 0.1465315609 - - -
9 Hb_012586_020 0.1491681038 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
10 Hb_003226_240 0.1496923468 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
11 Hb_004461_020 0.1531337875 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
12 Hb_141194_010 0.1559356842 - - PREDICTED: protein ZINC INDUCED FACILITATOR 1-like isoform X2 [Populus euphratica]
13 Hb_012053_040 0.1585353717 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
14 Hb_002478_020 0.1603811398 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
15 Hb_001369_210 0.1638174384 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
16 Hb_023051_020 0.1639787032 - - -
17 Hb_034482_040 0.1644455097 - - aspartate kinase, partial [Francisella tularensis]
18 Hb_089100_050 0.1646651662 - - -
19 Hb_039946_010 0.1652546762 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
20 Hb_000450_020 0.1666183338 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001143_070 Hb_001143_070 Hb_002989_040 Hb_002989_040 Hb_001143_070--Hb_002989_040 Hb_000103_030 Hb_000103_030 Hb_001143_070--Hb_000103_030 Hb_001348_230 Hb_001348_230 Hb_001143_070--Hb_001348_230 Hb_002290_050 Hb_002290_050 Hb_001143_070--Hb_002290_050 Hb_004942_020 Hb_004942_020 Hb_001143_070--Hb_004942_020 Hb_000352_160 Hb_000352_160 Hb_001143_070--Hb_000352_160 Hb_023051_020 Hb_023051_020 Hb_002989_040--Hb_023051_020 Hb_003226_240 Hb_003226_240 Hb_002989_040--Hb_003226_240 Hb_034482_040 Hb_034482_040 Hb_002989_040--Hb_034482_040 Hb_002989_040--Hb_000103_030 Hb_000920_320 Hb_000920_320 Hb_002989_040--Hb_000920_320 Hb_105602_020 Hb_105602_020 Hb_000103_030--Hb_105602_020 Hb_004461_020 Hb_004461_020 Hb_000103_030--Hb_004461_020 Hb_089100_050 Hb_089100_050 Hb_000103_030--Hb_089100_050 Hb_001425_070 Hb_001425_070 Hb_000103_030--Hb_001425_070 Hb_001348_230--Hb_000352_160 Hb_002588_040 Hb_002588_040 Hb_001348_230--Hb_002588_040 Hb_001369_210 Hb_001369_210 Hb_001348_230--Hb_001369_210 Hb_001146_060 Hb_001146_060 Hb_001348_230--Hb_001146_060 Hb_000563_260 Hb_000563_260 Hb_001348_230--Hb_000563_260 Hb_012586_020 Hb_012586_020 Hb_002290_050--Hb_012586_020 Hb_001186_070 Hb_001186_070 Hb_002290_050--Hb_001186_070 Hb_113635_010 Hb_113635_010 Hb_002290_050--Hb_113635_010 Hb_039946_010 Hb_039946_010 Hb_002290_050--Hb_039946_010 Hb_002290_050--Hb_004942_020 Hb_058143_010 Hb_058143_010 Hb_004942_020--Hb_058143_010 Hb_004942_020--Hb_012586_020 Hb_113906_010 Hb_113906_010 Hb_004942_020--Hb_113906_010 Hb_002478_020 Hb_002478_020 Hb_004942_020--Hb_002478_020 Hb_000352_180 Hb_000352_180 Hb_004942_020--Hb_000352_180 Hb_000352_160--Hb_001369_210 Hb_000352_160--Hb_002588_040 Hb_000352_160--Hb_001146_060 Hb_001767_050 Hb_001767_050 Hb_000352_160--Hb_001767_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.3328 9.86706 2.85776 3.897 7.88438 3.45929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
431.968 1396.16 697.265 38.4973 4.72962

CAGE analysis