Hb_001143_090

Information

Type -
Description -
Location Contig1143: 87231-91996
Sequence    

Annotation

kegg
ID rcu:RCOM_1030570
description IAA-amino acid hydrolase ILR1 precursor, putative (EC:3.5.1.32)
nr
ID XP_012078362.1
description PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]
swissprot
ID Q8VYX0
description IAA-amino acid hydrolase ILR1-like 6 OS=Arabidopsis thaliana GN=ILL6 PE=2 SV=2
trembl
ID B9RJ28
description IAA-amino acid hydrolase ILR1, putative OS=Ricinus communis GN=RCOM_1030570 PE=4 SV=1
Gene Ontology
ID GO:0047980
description iaa-amino acid hydrolase ilr1-like 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04325: 87334-87494 , PASA_asmbl_04326: 91177-91773 , PASA_asmbl_04327: 88667-91561
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001143_090 0.0 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]
2 Hb_000749_250 0.1090294108 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
3 Hb_004453_140 0.1204740171 - - PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
4 Hb_002392_040 0.1213419543 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000363_010 0.1282399751 - - -
6 Hb_001278_050 0.1369194838 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
7 Hb_003943_030 0.1382664265 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
8 Hb_001232_130 0.1391611734 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
9 Hb_015934_020 0.1412909774 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
10 Hb_000193_240 0.1455310013 - - hypothetical protein CISIN_1g0449881mg, partial [Citrus sinensis]
11 Hb_001213_120 0.1513165777 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
12 Hb_002078_460 0.1515089358 - - -
13 Hb_002983_030 0.1516017554 desease resistance Gene Name: NB-ARC hypothetical protein CISIN_1g046124mg, partial [Citrus sinensis]
14 Hb_001396_220 0.1529956091 - - nuclear transport factor, putative [Ricinus communis]
15 Hb_002936_050 0.1531810337 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
16 Hb_002897_060 0.1534518769 - - PREDICTED: uncharacterized protein LOC105649233 [Jatropha curcas]
17 Hb_011457_170 0.1537451634 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
18 Hb_000032_220 0.1554382546 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
19 Hb_042729_010 0.1556311024 - - -
20 Hb_000380_020 0.1586548048 transcription factor TF Family: C3H PREDICTED: zinc finger protein 36, C3H1 type-like 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001143_090 Hb_001143_090 Hb_000749_250 Hb_000749_250 Hb_001143_090--Hb_000749_250 Hb_004453_140 Hb_004453_140 Hb_001143_090--Hb_004453_140 Hb_002392_040 Hb_002392_040 Hb_001143_090--Hb_002392_040 Hb_000363_010 Hb_000363_010 Hb_001143_090--Hb_000363_010 Hb_001278_050 Hb_001278_050 Hb_001143_090--Hb_001278_050 Hb_003943_030 Hb_003943_030 Hb_001143_090--Hb_003943_030 Hb_001232_130 Hb_001232_130 Hb_000749_250--Hb_001232_130 Hb_000749_250--Hb_003943_030 Hb_163950_010 Hb_163950_010 Hb_000749_250--Hb_163950_010 Hb_001959_160 Hb_001959_160 Hb_000749_250--Hb_001959_160 Hb_001946_320 Hb_001946_320 Hb_000749_250--Hb_001946_320 Hb_002983_030 Hb_002983_030 Hb_004453_140--Hb_002983_030 Hb_015934_020 Hb_015934_020 Hb_004453_140--Hb_015934_020 Hb_000193_240 Hb_000193_240 Hb_004453_140--Hb_000193_240 Hb_000329_600 Hb_000329_600 Hb_004453_140--Hb_000329_600 Hb_011457_170 Hb_011457_170 Hb_004453_140--Hb_011457_170 Hb_000983_100 Hb_000983_100 Hb_002392_040--Hb_000983_100 Hb_002897_060 Hb_002897_060 Hb_002392_040--Hb_002897_060 Hb_007229_060 Hb_007229_060 Hb_002392_040--Hb_007229_060 Hb_026988_020 Hb_026988_020 Hb_002392_040--Hb_026988_020 Hb_005000_290 Hb_005000_290 Hb_002392_040--Hb_005000_290 Hb_001366_220 Hb_001366_220 Hb_002392_040--Hb_001366_220 Hb_000934_030 Hb_000934_030 Hb_000363_010--Hb_000934_030 Hb_003878_030 Hb_003878_030 Hb_000363_010--Hb_003878_030 Hb_042729_010 Hb_042729_010 Hb_000363_010--Hb_042729_010 Hb_000363_010--Hb_002392_040 Hb_001153_200 Hb_001153_200 Hb_000363_010--Hb_001153_200 Hb_001329_210 Hb_001329_210 Hb_001278_050--Hb_001329_210 Hb_002078_460 Hb_002078_460 Hb_001278_050--Hb_002078_460 Hb_002936_050 Hb_002936_050 Hb_001278_050--Hb_002936_050 Hb_000032_220 Hb_000032_220 Hb_001278_050--Hb_000032_220 Hb_007666_020 Hb_007666_020 Hb_001278_050--Hb_007666_020 Hb_001278_050--Hb_002897_060 Hb_003943_030--Hb_001959_160 Hb_003943_030--Hb_001232_130 Hb_007429_030 Hb_007429_030 Hb_003943_030--Hb_007429_030 Hb_000156_100 Hb_000156_100 Hb_003943_030--Hb_000156_100 Hb_002290_040 Hb_002290_040 Hb_003943_030--Hb_002290_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.7804 13.3049 0.394667 5.9986 45.6172 43.2577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.7016 105.509 156.647 24.9018 0.0814287

CAGE analysis