Hb_001143_110

Information

Type -
Description -
Location Contig1143: 100511-105260
Sequence    

Annotation

kegg
ID rcu:RCOM_1030540
description protein disulfide isomerase, putative (EC:2.4.1.119)
nr
ID KDP32815.1
description hypothetical protein JCGZ_12107 [Jatropha curcas]
swissprot
ID Q43116
description Protein disulfide-isomerase OS=Ricinus communis PE=2 SV=1
trembl
ID A0A067KKM7
description Protein disulfide-isomerase OS=Jatropha curcas GN=JCGZ_12107 PE=3 SV=1
Gene Ontology
ID GO:0005783
description pdi-like 1-1 isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04333: 100348-105196
cDNA
(Sanger)
(ID:Location)		 011_P23.ab1: 103219-105185 , 042_D09.ab1: 103225-105194

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001143_110 0.0 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
2 Hb_001541_080 0.0730143286 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003464_020 0.0758117579 - - srpk, putative [Ricinus communis]
4 Hb_001675_070 0.0829913668 - - eukaryotic translation elongation factor, putative [Ricinus communis]
5 Hb_000317_250 0.0840165176 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
6 Hb_000023_190 0.084657213 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
7 Hb_033834_060 0.0872916883 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
8 Hb_000920_210 0.0910581332 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
9 Hb_001488_410 0.0911614364 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
10 Hb_002273_130 0.0946077645 - - PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]
11 Hb_000333_060 0.0949344556 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
12 Hb_001541_090 0.0950799838 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
13 Hb_010381_060 0.0955450329 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
14 Hb_000076_270 0.0971564842 - - PREDICTED: DDRGK domain-containing protein 1 [Populus euphratica]
15 Hb_001341_120 0.0992680364 - - hypothetical protein B456_001G130300 [Gossypium raimondii]
16 Hb_006114_030 0.099340091 transcription factor TF Family: SET hypothetical protein CISIN_1g011639mg [Citrus sinensis]
17 Hb_020719_030 0.0994821722 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
18 Hb_001300_070 0.1013655906 - - OTU domain-containing protein 6B, putative [Ricinus communis]
19 Hb_021409_170 0.1020356142 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
20 Hb_000029_130 0.1038786778 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001143_110 Hb_001143_110 Hb_001541_080 Hb_001541_080 Hb_001143_110--Hb_001541_080 Hb_003464_020 Hb_003464_020 Hb_001143_110--Hb_003464_020 Hb_001675_070 Hb_001675_070 Hb_001143_110--Hb_001675_070 Hb_000317_250 Hb_000317_250 Hb_001143_110--Hb_000317_250 Hb_000023_190 Hb_000023_190 Hb_001143_110--Hb_000023_190 Hb_033834_060 Hb_033834_060 Hb_001143_110--Hb_033834_060 Hb_000300_440 Hb_000300_440 Hb_001541_080--Hb_000300_440 Hb_001541_080--Hb_003464_020 Hb_001541_080--Hb_000317_250 Hb_001221_040 Hb_001221_040 Hb_001541_080--Hb_001221_040 Hb_001541_080--Hb_001675_070 Hb_003464_020--Hb_000023_190 Hb_010381_060 Hb_010381_060 Hb_003464_020--Hb_010381_060 Hb_021409_170 Hb_021409_170 Hb_003464_020--Hb_021409_170 Hb_001488_410 Hb_001488_410 Hb_003464_020--Hb_001488_410 Hb_000567_050 Hb_000567_050 Hb_003464_020--Hb_000567_050 Hb_002044_060 Hb_002044_060 Hb_003464_020--Hb_002044_060 Hb_000209_070 Hb_000209_070 Hb_001675_070--Hb_000209_070 Hb_001675_070--Hb_003464_020 Hb_011716_020 Hb_011716_020 Hb_001675_070--Hb_011716_020 Hb_000347_130 Hb_000347_130 Hb_001675_070--Hb_000347_130 Hb_000317_250--Hb_033834_060 Hb_000333_060 Hb_000333_060 Hb_000317_250--Hb_000333_060 Hb_004689_050 Hb_004689_050 Hb_000317_250--Hb_004689_050 Hb_000317_250--Hb_003464_020 Hb_000023_190--Hb_000567_050 Hb_004218_240 Hb_004218_240 Hb_000023_190--Hb_004218_240 Hb_000023_190--Hb_010381_060 Hb_000023_190--Hb_001488_410 Hb_000023_190--Hb_021409_170 Hb_020719_030 Hb_020719_030 Hb_033834_060--Hb_020719_030 Hb_033834_060--Hb_004689_050 Hb_004429_100 Hb_004429_100 Hb_033834_060--Hb_004429_100 Hb_009627_010 Hb_009627_010 Hb_033834_060--Hb_009627_010 Hb_001172_010 Hb_001172_010 Hb_033834_060--Hb_001172_010 Hb_033834_060--Hb_001488_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
100.781 39.7976 56.2538 66.9615 163.614 157.977
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
85.3315 34.2433 52.7242 121.199 61.7944

CAGE analysis