Hb_001143_130

Information

Type -
Description -
Location Contig1143: 127102-132632
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08240g
description POPTRDRAFT_798682; hypothetical protein
nr
ID AHK10128.1
description peroxidase 2 [Hevea brasiliensis]
swissprot
ID Q42593
description L-ascorbate peroxidase T, chloroplastic OS=Arabidopsis thaliana GN=APXT PE=2 SV=2
trembl
ID W8FRU7
description Peroxidase 2 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0004601
description probable l-ascorbate peroxidase chloroplastic isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04335: 127267-132728 , PASA_asmbl_04336: 127281-132728
cDNA
(Sanger)
(ID:Location)		 005_G17.ab1: 129616-132609 , 014_G14.ab1: 130623-132728 , 039_A23.ab1: 129632-132609 , 042_M11.ab1: 129600-132609

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001143_130 0.0 - - peroxidase 2 [Hevea brasiliensis]
2 Hb_003747_220 0.085029721 - - PREDICTED: syntaxin-22-like isoform X2 [Jatropha curcas]
3 Hb_007590_050 0.0855208795 - - NudC domain-containing protein, putative [Ricinus communis]
4 Hb_000252_150 0.0902167398 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000905_060 0.0920316294 - - protein with unknown function [Ricinus communis]
6 Hb_000120_330 0.0930534784 - - conserved hypothetical protein [Ricinus communis]
7 Hb_024071_020 0.0935233922 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
8 Hb_000109_160 0.094891512 - - hypothetical protein PRUPE_ppa012786mg [Prunus persica]
9 Hb_030736_080 0.0957270673 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000635_180 0.0968972441 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
11 Hb_000610_050 0.0988167942 - - skp1, putative [Ricinus communis]
12 Hb_000101_270 0.1007959052 - - pleckstrin homology domain-containing family protein [Populus trichocarpa]
13 Hb_000796_210 0.1014439374 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000059_330 0.1022587926 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
15 Hb_007875_030 0.1028936421 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
16 Hb_005928_110 0.1033736065 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
17 Hb_027472_040 0.1040140314 - - SKP1 [Hevea brasiliensis]
18 Hb_000462_130 0.1048490204 - - hypothetical protein CICLE_v10009355mg [Citrus clementina]
19 Hb_001159_140 0.1067809738 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
20 Hb_028995_040 0.1076332089 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001143_130 Hb_001143_130 Hb_003747_220 Hb_003747_220 Hb_001143_130--Hb_003747_220 Hb_007590_050 Hb_007590_050 Hb_001143_130--Hb_007590_050 Hb_000252_150 Hb_000252_150 Hb_001143_130--Hb_000252_150 Hb_000905_060 Hb_000905_060 Hb_001143_130--Hb_000905_060 Hb_000120_330 Hb_000120_330 Hb_001143_130--Hb_000120_330 Hb_024071_020 Hb_024071_020 Hb_001143_130--Hb_024071_020 Hb_003747_220--Hb_000252_150 Hb_000635_180 Hb_000635_180 Hb_003747_220--Hb_000635_180 Hb_000462_130 Hb_000462_130 Hb_003747_220--Hb_000462_130 Hb_000179_070 Hb_000179_070 Hb_003747_220--Hb_000179_070 Hb_004586_140 Hb_004586_140 Hb_003747_220--Hb_004586_140 Hb_005357_030 Hb_005357_030 Hb_007590_050--Hb_005357_030 Hb_002685_170 Hb_002685_170 Hb_007590_050--Hb_002685_170 Hb_000109_160 Hb_000109_160 Hb_007590_050--Hb_000109_160 Hb_000656_400 Hb_000656_400 Hb_007590_050--Hb_000656_400 Hb_020956_020 Hb_020956_020 Hb_007590_050--Hb_020956_020 Hb_003126_080 Hb_003126_080 Hb_007590_050--Hb_003126_080 Hb_000529_020 Hb_000529_020 Hb_000252_150--Hb_000529_020 Hb_000252_150--Hb_007590_050 Hb_000252_150--Hb_000179_070 Hb_005928_110 Hb_005928_110 Hb_000252_150--Hb_005928_110 Hb_029388_020 Hb_029388_020 Hb_000905_060--Hb_029388_020 Hb_000905_060--Hb_024071_020 Hb_030736_080 Hb_030736_080 Hb_000905_060--Hb_030736_080 Hb_027472_040 Hb_027472_040 Hb_000905_060--Hb_027472_040 Hb_003787_010 Hb_003787_010 Hb_000905_060--Hb_003787_010 Hb_003126_050 Hb_003126_050 Hb_000905_060--Hb_003126_050 Hb_001437_080 Hb_001437_080 Hb_000120_330--Hb_001437_080 Hb_002813_040 Hb_002813_040 Hb_000120_330--Hb_002813_040 Hb_004032_360 Hb_004032_360 Hb_000120_330--Hb_004032_360 Hb_003125_200 Hb_003125_200 Hb_000120_330--Hb_003125_200 Hb_015279_010 Hb_015279_010 Hb_000120_330--Hb_015279_010 Hb_001140_370 Hb_001140_370 Hb_024071_020--Hb_001140_370 Hb_000610_050 Hb_000610_050 Hb_024071_020--Hb_000610_050 Hb_024071_020--Hb_003126_050 Hb_000020_060 Hb_000020_060 Hb_024071_020--Hb_000020_060 Hb_000059_330 Hb_000059_330 Hb_024071_020--Hb_000059_330 Hb_003428_030 Hb_003428_030 Hb_024071_020--Hb_003428_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
72.634 70.8073 39.0827 58.8229 59.8565 65.391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
115.606 123.818 42.4603 40.5218 16.5593

CAGE analysis