Hb_001143_140

Information

Type -
Description -
Location Contig1143: 139477-146455
Sequence    

Annotation

kegg
ID rcu:RCOM_0563960
description Aldehyde dehydrogenase, putative (EC:1.2.1.5)
nr
ID XP_002520352.1
description Aldehyde dehydrogenase, putative [Ricinus communis]
swissprot
ID Q70DU8
description Aldehyde dehydrogenase family 3 member H1 OS=Arabidopsis thaliana GN=ALDH3H1 PE=1 SV=2
trembl
ID B9S2Y3
description Aldehyde dehydrogenase OS=Ricinus communis GN=RCOM_0563960 PE=3 SV=1
Gene Ontology
ID GO:0004030
description the aldehyde dehydrogenase cp-adh from family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04337: 139757-146404
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001143_140 0.0 - - Aldehyde dehydrogenase, putative [Ricinus communis]
2 Hb_004307_070 0.0864824607 - - kinase, putative [Ricinus communis]
3 Hb_012743_020 0.0885686055 - - serine/threonine protein phosphatase, putative [Ricinus communis]
4 Hb_026144_030 0.0947921898 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
5 Hb_002000_130 0.095893079 - - PREDICTED: abscisic stress-ripening protein 2-like [Eucalyptus grandis]
6 Hb_003226_030 0.10010167 - - sucrose synthase 5 [Hevea brasiliensis]
7 Hb_000614_190 0.1015716574 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
8 Hb_008092_020 0.1023130033 - - transcription factor, putative [Ricinus communis]
9 Hb_001706_020 0.1024722253 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
10 Hb_008111_010 0.1031813024 - - hypothetical protein VITISV_021527 [Vitis vinifera]
11 Hb_000589_240 0.1041438861 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
12 Hb_005034_010 0.1054412452 - - alcohol dehydrogenase, putative [Ricinus communis]
13 Hb_000347_420 0.1105077624 - - hypothetical protein JCGZ_24696 [Jatropha curcas]
14 Hb_002010_070 0.1117793998 - - hypothetical protein EUGRSUZ_I027342, partial [Eucalyptus grandis]
15 Hb_001174_030 0.1148336861 - - unnamed protein product [Vitis vinifera]
16 Hb_000028_460 0.1151116221 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
17 Hb_060198_010 0.1191606377 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
18 Hb_000095_070 0.1202165024 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005054_280 0.1204201987 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
20 Hb_029260_010 0.1209476551 - - nitrate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001143_140 Hb_001143_140 Hb_004307_070 Hb_004307_070 Hb_001143_140--Hb_004307_070 Hb_012743_020 Hb_012743_020 Hb_001143_140--Hb_012743_020 Hb_026144_030 Hb_026144_030 Hb_001143_140--Hb_026144_030 Hb_002000_130 Hb_002000_130 Hb_001143_140--Hb_002000_130 Hb_003226_030 Hb_003226_030 Hb_001143_140--Hb_003226_030 Hb_000614_190 Hb_000614_190 Hb_001143_140--Hb_000614_190 Hb_000347_420 Hb_000347_420 Hb_004307_070--Hb_000347_420 Hb_006355_070 Hb_006355_070 Hb_004307_070--Hb_006355_070 Hb_000095_070 Hb_000095_070 Hb_004307_070--Hb_000095_070 Hb_009641_040 Hb_009641_040 Hb_004307_070--Hb_009641_040 Hb_000994_100 Hb_000994_100 Hb_004307_070--Hb_000994_100 Hb_005357_020 Hb_005357_020 Hb_012743_020--Hb_005357_020 Hb_012743_020--Hb_003226_030 Hb_000589_240 Hb_000589_240 Hb_012743_020--Hb_000589_240 Hb_029260_010 Hb_029260_010 Hb_012743_020--Hb_029260_010 Hb_012743_020--Hb_002000_130 Hb_008111_010 Hb_008111_010 Hb_026144_030--Hb_008111_010 Hb_026144_030--Hb_000614_190 Hb_000767_010 Hb_000767_010 Hb_026144_030--Hb_000767_010 Hb_123560_050 Hb_123560_050 Hb_026144_030--Hb_123560_050 Hb_007420_020 Hb_007420_020 Hb_026144_030--Hb_007420_020 Hb_002000_130--Hb_003226_030 Hb_008092_020 Hb_008092_020 Hb_002000_130--Hb_008092_020 Hb_000028_460 Hb_000028_460 Hb_002000_130--Hb_000028_460 Hb_003835_030 Hb_003835_030 Hb_002000_130--Hb_003835_030 Hb_002000_130--Hb_000614_190 Hb_007943_020 Hb_007943_020 Hb_003226_030--Hb_007943_020 Hb_003226_030--Hb_005357_020 Hb_003226_030--Hb_008092_020 Hb_114310_050 Hb_114310_050 Hb_000614_190--Hb_114310_050 Hb_005054_280 Hb_005054_280 Hb_000614_190--Hb_005054_280 Hb_000614_190--Hb_007420_020 Hb_005034_010 Hb_005034_010 Hb_000614_190--Hb_005034_010 Hb_001174_030 Hb_001174_030 Hb_000614_190--Hb_001174_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0286993 42.8566 13.885 47.5978 0.0914258 0.051017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.260838 0.102619 0.0649239 36.2218 41.6799

CAGE analysis