Hb_001143_170

Information

Type -
Description -
Location Contig1143: 169814-173265
Sequence    

Annotation

kegg
ID rcu:RCOM_0563790
description nucellin, putative
nr
ID XP_002520345.1
description nucellin, putative [Ricinus communis]
swissprot
ID Q0IU52
description Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1
trembl
ID B9S2X6
description Nucellin, putative OS=Ricinus communis GN=RCOM_0563790 PE=4 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase asp1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04342: 169793-170291 , PASA_asmbl_04343: 172437-172932 , PASA_asmbl_04344: 172437-173121
cDNA
(Sanger)
(ID:Location)		 020_P18.ab1: 169795-170290 , 030_F20.ab1: 169795-170290

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001143_170 0.0 - - nucellin, putative [Ricinus communis]
2 Hb_021068_050 0.0919207612 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
3 Hb_026198_050 0.0920871846 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
4 Hb_007919_050 0.092799158 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
5 Hb_001008_060 0.0966207428 - - PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Jatropha curcas]
6 Hb_159558_030 0.0970448042 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
7 Hb_001221_410 0.097293563 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
8 Hb_000402_200 0.0973319597 - - PREDICTED: uncharacterized protein LOC105644655 [Jatropha curcas]
9 Hb_003994_180 0.0973900466 - - PREDICTED: probable mitochondrial adenine nucleotide transporter BTL1 [Jatropha curcas]
10 Hb_001195_690 0.0985679426 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
11 Hb_009711_030 0.1026218934 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
12 Hb_004324_310 0.1028809056 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003052_100 0.104777053 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_022216_020 0.1057834717 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
15 Hb_001377_290 0.1062480178 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
16 Hb_001246_090 0.1064822345 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
17 Hb_002078_450 0.106952712 - - nuclear transport factor, putative [Ricinus communis]
18 Hb_158092_070 0.1071842495 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
19 Hb_004657_020 0.1077039051 - - rer1 protein, putative [Ricinus communis]
20 Hb_011537_010 0.1081618922 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]

Gene co-expression network

sample Hb_001143_170 Hb_001143_170 Hb_021068_050 Hb_021068_050 Hb_001143_170--Hb_021068_050 Hb_026198_050 Hb_026198_050 Hb_001143_170--Hb_026198_050 Hb_007919_050 Hb_007919_050 Hb_001143_170--Hb_007919_050 Hb_001008_060 Hb_001008_060 Hb_001143_170--Hb_001008_060 Hb_159558_030 Hb_159558_030 Hb_001143_170--Hb_159558_030 Hb_001221_410 Hb_001221_410 Hb_001143_170--Hb_001221_410 Hb_000376_050 Hb_000376_050 Hb_021068_050--Hb_000376_050 Hb_002603_100 Hb_002603_100 Hb_021068_050--Hb_002603_100 Hb_024835_030 Hb_024835_030 Hb_021068_050--Hb_024835_030 Hb_022250_040 Hb_022250_040 Hb_021068_050--Hb_022250_040 Hb_004012_010 Hb_004012_010 Hb_021068_050--Hb_004012_010 Hb_021068_050--Hb_026198_050 Hb_026198_050--Hb_004012_010 Hb_000392_270 Hb_000392_270 Hb_026198_050--Hb_000392_270 Hb_002762_060 Hb_002762_060 Hb_026198_050--Hb_002762_060 Hb_003551_020 Hb_003551_020 Hb_026198_050--Hb_003551_020 Hb_001138_050 Hb_001138_050 Hb_026198_050--Hb_001138_050 Hb_004722_060 Hb_004722_060 Hb_026198_050--Hb_004722_060 Hb_001439_120 Hb_001439_120 Hb_007919_050--Hb_001439_120 Hb_006569_020 Hb_006569_020 Hb_007919_050--Hb_006569_020 Hb_007919_050--Hb_159558_030 Hb_000500_130 Hb_000500_130 Hb_007919_050--Hb_000500_130 Hb_158092_070 Hb_158092_070 Hb_007919_050--Hb_158092_070 Hb_007919_050--Hb_022250_040 Hb_009711_030 Hb_009711_030 Hb_001008_060--Hb_009711_030 Hb_002078_450 Hb_002078_450 Hb_001008_060--Hb_002078_450 Hb_001008_060--Hb_022250_040 Hb_000085_320 Hb_000085_320 Hb_001008_060--Hb_000085_320 Hb_011794_070 Hb_011794_070 Hb_001008_060--Hb_011794_070 Hb_000703_140 Hb_000703_140 Hb_001008_060--Hb_000703_140 Hb_159558_030--Hb_000500_130 Hb_002400_220 Hb_002400_220 Hb_159558_030--Hb_002400_220 Hb_000272_100 Hb_000272_100 Hb_159558_030--Hb_000272_100 Hb_159558_030--Hb_006569_020 Hb_159558_030--Hb_158092_070 Hb_002553_020 Hb_002553_020 Hb_159558_030--Hb_002553_020 Hb_007254_040 Hb_007254_040 Hb_001221_410--Hb_007254_040 Hb_032717_080 Hb_032717_080 Hb_001221_410--Hb_032717_080 Hb_002105_090 Hb_002105_090 Hb_001221_410--Hb_002105_090 Hb_000169_010 Hb_000169_010 Hb_001221_410--Hb_000169_010 Hb_001135_050 Hb_001135_050 Hb_001221_410--Hb_001135_050 Hb_001246_090 Hb_001246_090 Hb_001221_410--Hb_001246_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.9308 8.82011 3.34387 13.0376 23.7917 18.079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.5326 23.8596 18.7666 7.63058 1.56106

CAGE analysis