Hb_001143_180

Information

Type -
Description -
Location Contig1143: 174546-178544
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08170g
description POPTRDRAFT_816262; replication factor C 36 kDA family protein
nr
ID XP_012078293.1
description PREDICTED: replication factor C subunit 5 [Jatropha curcas]
swissprot
ID Q9CAQ8
description Replication factor C subunit 5 OS=Arabidopsis thaliana GN=RFC5 PE=1 SV=1
trembl
ID A0A067KKP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12132 PE=4 SV=1
Gene Ontology
ID GO:0005524
description replication factor c subunit 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04345: 174608-178462 , PASA_asmbl_04346: 177276-177740
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001143_180 0.0 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
2 Hb_003878_110 0.0643832021 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
3 Hb_000291_060 0.0645535472 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
4 Hb_033834_030 0.0652645716 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
5 Hb_006816_050 0.066837971 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Jatropha curcas]
6 Hb_183612_040 0.0672857725 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
7 Hb_005337_090 0.0678503253 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
8 Hb_002942_050 0.0708750207 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
9 Hb_000777_050 0.0715670578 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
10 Hb_001433_070 0.0724780199 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
11 Hb_002684_040 0.0736054536 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
12 Hb_131646_010 0.0742514579 - - protein arginine n-methyltransferase, putative [Ricinus communis]
13 Hb_000270_460 0.0748343711 - - PREDICTED: anaphase-promoting complex subunit 8 [Jatropha curcas]
14 Hb_000005_220 0.0754305455 - - DNA ligase 1, partial [Glycine soja]
15 Hb_001051_080 0.075452728 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
16 Hb_003680_230 0.0756389255 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
17 Hb_000576_020 0.0766303564 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
18 Hb_006355_010 0.0774338293 - - PREDICTED: protein NLRC3 [Jatropha curcas]
19 Hb_005965_030 0.0784151931 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
20 Hb_004785_100 0.0789318266 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001143_180 Hb_001143_180 Hb_003878_110 Hb_003878_110 Hb_001143_180--Hb_003878_110 Hb_000291_060 Hb_000291_060 Hb_001143_180--Hb_000291_060 Hb_033834_030 Hb_033834_030 Hb_001143_180--Hb_033834_030 Hb_006816_050 Hb_006816_050 Hb_001143_180--Hb_006816_050 Hb_183612_040 Hb_183612_040 Hb_001143_180--Hb_183612_040 Hb_005337_090 Hb_005337_090 Hb_001143_180--Hb_005337_090 Hb_002684_040 Hb_002684_040 Hb_003878_110--Hb_002684_040 Hb_001433_070 Hb_001433_070 Hb_003878_110--Hb_001433_070 Hb_000331_110 Hb_000331_110 Hb_003878_110--Hb_000331_110 Hb_079526_030 Hb_079526_030 Hb_003878_110--Hb_079526_030 Hb_002374_260 Hb_002374_260 Hb_003878_110--Hb_002374_260 Hb_000291_060--Hb_006816_050 Hb_154114_010 Hb_154114_010 Hb_000291_060--Hb_154114_010 Hb_002078_110 Hb_002078_110 Hb_000291_060--Hb_002078_110 Hb_111198_010 Hb_111198_010 Hb_000291_060--Hb_111198_010 Hb_001030_110 Hb_001030_110 Hb_000291_060--Hb_001030_110 Hb_001051_080 Hb_001051_080 Hb_033834_030--Hb_001051_080 Hb_033834_030--Hb_005337_090 Hb_002175_030 Hb_002175_030 Hb_033834_030--Hb_002175_030 Hb_000120_430 Hb_000120_430 Hb_033834_030--Hb_000120_430 Hb_000020_150 Hb_000020_150 Hb_033834_030--Hb_000020_150 Hb_003680_230 Hb_003680_230 Hb_006816_050--Hb_003680_230 Hb_007558_120 Hb_007558_120 Hb_006816_050--Hb_007558_120 Hb_006816_050--Hb_154114_010 Hb_131646_010 Hb_131646_010 Hb_006816_050--Hb_131646_010 Hb_000005_220 Hb_000005_220 Hb_183612_040--Hb_000005_220 Hb_001089_110 Hb_001089_110 Hb_183612_040--Hb_001089_110 Hb_183612_040--Hb_002684_040 Hb_183612_040--Hb_001433_070 Hb_183612_040--Hb_003878_110 Hb_183612_040--Hb_079526_030 Hb_005337_090--Hb_001089_110 Hb_027428_010 Hb_027428_010 Hb_005337_090--Hb_027428_010 Hb_000308_030 Hb_000308_030 Hb_005337_090--Hb_000308_030 Hb_005337_090--Hb_000005_220 Hb_073973_130 Hb_073973_130 Hb_005337_090--Hb_073973_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.969 18.2986 21.1514 14.5954 21.3973 24.9851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.6777 12.49 8.91961 14.3845 9.03571

CAGE analysis