Hb_001143_200

Information

Type transcription factor
Description TF Family: NAC
Location Contig1143: 194774-196742
Sequence    

Annotation

kegg
ID mtr:MTR_3g088110
description NAC domain protein
nr
ID ACD39377.1
description NAC domain protein [Glycine max]
swissprot
ID Q39013
description NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2
trembl
ID B2ZGR2
description NAC domain protein (Fragment) OS=Glycine max GN=NAC19 PE=2 SV=1
Gene Ontology
ID GO:0003677
description nac domain protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04353: 194648-196686 , PASA_asmbl_04355: 195748-196686
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001143_200 0.0 transcription factor TF Family: NAC NAC domain protein [Glycine max]
2 Hb_000042_020 0.0884574335 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
3 Hb_000280_100 0.1094880964 - - hypothetical protein JCGZ_13378 [Jatropha curcas]
4 Hb_003935_050 0.1187008266 - - protein with unknown function [Ricinus communis]
5 Hb_001040_050 0.1267547542 - - Stem-specific protein TSJT1, putative [Ricinus communis]
6 Hb_007441_290 0.1329224857 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
7 Hb_000388_040 0.1347305511 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
8 Hb_012633_010 0.1353773038 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 49 [Jatropha curcas]
9 Hb_004650_040 0.1364826298 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105638892 [Jatropha curcas]
10 Hb_005695_070 0.1389204113 - - Cysteine-rich RLK 29 [Theobroma cacao]
11 Hb_000142_030 0.1392692573 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
12 Hb_007919_070 0.1415499153 - - hypothetical protein POPTR_0005s28110g [Populus trichocarpa]
13 Hb_002218_050 0.1429342767 - - SSXT family protein isoform 2, partial [Theobroma cacao]
14 Hb_002447_060 0.1468140061 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
15 Hb_006519_020 0.1477774503 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
16 Hb_000349_170 0.1477931265 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
17 Hb_163140_010 0.1508526081 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
18 Hb_002435_010 0.1515846386 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
19 Hb_028187_010 0.151816641 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
20 Hb_007101_250 0.1521013314 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001143_200 Hb_001143_200 Hb_000042_020 Hb_000042_020 Hb_001143_200--Hb_000042_020 Hb_000280_100 Hb_000280_100 Hb_001143_200--Hb_000280_100 Hb_003935_050 Hb_003935_050 Hb_001143_200--Hb_003935_050 Hb_001040_050 Hb_001040_050 Hb_001143_200--Hb_001040_050 Hb_007441_290 Hb_007441_290 Hb_001143_200--Hb_007441_290 Hb_000388_040 Hb_000388_040 Hb_001143_200--Hb_000388_040 Hb_000042_020--Hb_000280_100 Hb_116420_050 Hb_116420_050 Hb_000042_020--Hb_116420_050 Hb_027065_010 Hb_027065_010 Hb_000042_020--Hb_027065_010 Hb_007101_250 Hb_007101_250 Hb_000042_020--Hb_007101_250 Hb_127372_010 Hb_127372_010 Hb_000042_020--Hb_127372_010 Hb_012633_010 Hb_012633_010 Hb_000280_100--Hb_012633_010 Hb_002435_010 Hb_002435_010 Hb_000280_100--Hb_002435_010 Hb_000280_100--Hb_003935_050 Hb_000280_100--Hb_027065_010 Hb_005695_070 Hb_005695_070 Hb_003935_050--Hb_005695_070 Hb_163140_010 Hb_163140_010 Hb_003935_050--Hb_163140_010 Hb_007919_070 Hb_007919_070 Hb_003935_050--Hb_007919_070 Hb_028187_010 Hb_028187_010 Hb_003935_050--Hb_028187_010 Hb_002447_060 Hb_002447_060 Hb_001040_050--Hb_002447_060 Hb_000115_190 Hb_000115_190 Hb_001040_050--Hb_000115_190 Hb_006519_020 Hb_006519_020 Hb_001040_050--Hb_006519_020 Hb_002079_100 Hb_002079_100 Hb_001040_050--Hb_002079_100 Hb_001040_050--Hb_012633_010 Hb_000347_160 Hb_000347_160 Hb_001040_050--Hb_000347_160 Hb_004650_040 Hb_004650_040 Hb_007441_290--Hb_004650_040 Hb_169753_010 Hb_169753_010 Hb_007441_290--Hb_169753_010 Hb_002205_160 Hb_002205_160 Hb_007441_290--Hb_002205_160 Hb_012753_150 Hb_012753_150 Hb_007441_290--Hb_012753_150 Hb_010267_020 Hb_010267_020 Hb_007441_290--Hb_010267_020 Hb_007441_290--Hb_006519_020 Hb_003767_030 Hb_003767_030 Hb_000388_040--Hb_003767_030 Hb_000388_040--Hb_012753_150 Hb_000349_170 Hb_000349_170 Hb_000388_040--Hb_000349_170 Hb_002218_050 Hb_002218_050 Hb_000388_040--Hb_002218_050 Hb_000388_040--Hb_010267_020 Hb_000388_040--Hb_007441_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.11998 196.585 1308.69 136.463 1.53928 0.767043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.56796 18.6217 4.89235 31.1644 50.4895

CAGE analysis