Hb_001143_210

Information

Type -
Description -
Location Contig1143: 207648-208295
Sequence    

Annotation

kegg
ID rcu:RCOM_0563340
description ring finger protein, putative
nr
ID XP_012078366.1
description PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
swissprot
ID Q9LT17
description E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1
trembl
ID A0A067K9Q5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12129 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin ligase big brother-related-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04356: 207587-207861
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001143_210 0.0 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
2 Hb_149507_010 0.122106837 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Malus domestica]
3 Hb_001269_660 0.1260679725 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
4 Hb_010264_010 0.1372150335 - - PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Jatropha curcas]
5 Hb_006992_010 0.138815048 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
6 Hb_000933_170 0.1395204862 - - PREDICTED: uncharacterized protein At5g01610 [Jatropha curcas]
7 Hb_002370_020 0.1397642238 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
8 Hb_002374_510 0.141918836 - - Esterase precursor, putative [Ricinus communis]
9 Hb_113766_010 0.1425193335 - - plasma membrane H+ ATPase, partial [Nicotiana plumbaginifolia]
10 Hb_000417_400 0.1461002892 - - PREDICTED: ubiquitin domain-containing protein 1-like isoform X1 [Jatropha curcas]
11 Hb_121624_010 0.1506301142 - - PREDICTED: uncharacterized protein LOC105634410 [Jatropha curcas]
12 Hb_012395_060 0.1527663812 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
13 Hb_004162_140 0.1531972167 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
14 Hb_001675_040 0.1538273294 - - conserved hypothetical protein [Ricinus communis]
15 Hb_025623_010 0.1560548688 - - -
16 Hb_000910_060 0.1574915956 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
17 Hb_003052_080 0.1576358698 desease resistance Gene Name: PRK PREDICTED: uridine-cytidine kinase C [Jatropha curcas]
18 Hb_032143_010 0.1581617824 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
19 Hb_001277_010 0.1607010633 - - unknown [Populus trichocarpa]
20 Hb_000017_140 0.1651812603 - - polygalacturonase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001143_210 Hb_001143_210 Hb_149507_010 Hb_149507_010 Hb_001143_210--Hb_149507_010 Hb_001269_660 Hb_001269_660 Hb_001143_210--Hb_001269_660 Hb_010264_010 Hb_010264_010 Hb_001143_210--Hb_010264_010 Hb_006992_010 Hb_006992_010 Hb_001143_210--Hb_006992_010 Hb_000933_170 Hb_000933_170 Hb_001143_210--Hb_000933_170 Hb_002370_020 Hb_002370_020 Hb_001143_210--Hb_002370_020 Hb_149507_010--Hb_002370_020 Hb_149507_010--Hb_001269_660 Hb_012395_060 Hb_012395_060 Hb_149507_010--Hb_012395_060 Hb_001277_010 Hb_001277_010 Hb_149507_010--Hb_001277_010 Hb_025623_010 Hb_025623_010 Hb_149507_010--Hb_025623_010 Hb_000866_400 Hb_000866_400 Hb_149507_010--Hb_000866_400 Hb_001269_660--Hb_012395_060 Hb_001269_660--Hb_010264_010 Hb_121624_010 Hb_121624_010 Hb_001269_660--Hb_121624_010 Hb_001269_660--Hb_001277_010 Hb_002518_230 Hb_002518_230 Hb_001269_660--Hb_002518_230 Hb_032143_010 Hb_032143_010 Hb_010264_010--Hb_032143_010 Hb_000017_140 Hb_000017_140 Hb_010264_010--Hb_000017_140 Hb_000265_030 Hb_000265_030 Hb_010264_010--Hb_000265_030 Hb_000665_210 Hb_000665_210 Hb_010264_010--Hb_000665_210 Hb_007101_140 Hb_007101_140 Hb_010264_010--Hb_007101_140 Hb_000963_120 Hb_000963_120 Hb_006992_010--Hb_000963_120 Hb_004374_030 Hb_004374_030 Hb_006992_010--Hb_004374_030 Hb_113766_010 Hb_113766_010 Hb_006992_010--Hb_113766_010 Hb_002391_240 Hb_002391_240 Hb_006992_010--Hb_002391_240 Hb_026198_020 Hb_026198_020 Hb_006992_010--Hb_026198_020 Hb_000309_070 Hb_000309_070 Hb_006992_010--Hb_000309_070 Hb_000933_170--Hb_001269_660 Hb_000910_060 Hb_000910_060 Hb_000933_170--Hb_000910_060 Hb_000933_170--Hb_002518_230 Hb_000933_170--Hb_149507_010 Hb_000933_170--Hb_012395_060 Hb_002370_020--Hb_000866_400 Hb_002370_020--Hb_025623_010 Hb_003371_280 Hb_003371_280 Hb_002370_020--Hb_003371_280 Hb_002370_020--Hb_001269_660 Hb_002374_510 Hb_002374_510 Hb_002370_020--Hb_002374_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0726458 1.00156 3.89591 0.078394 0.0346446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.141852 0 1.27439 3.33251

CAGE analysis