Hb_001143_220

Information

Type -
Description -
Location Contig1143: 210073-214598
Sequence    

Annotation

kegg
ID egr:104450924
description proteasome subunit beta type-3-A
nr
ID ADR70868.1
description 20S proteasome beta subunit C2 [Hevea brasiliensis]
swissprot
ID Q9XI05
description Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2
trembl
ID V5IV20
description Proteasome subunit beta type OS=Hevea brasiliensis GN=PBC2 PE=2 SV=1
Gene Ontology
ID GO:0005839
description proteasome subunit beta type-3-a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04357: 210221-214448 , PASA_asmbl_04358: 210218-214434
cDNA
(Sanger)
(ID:Location)		 035_A21.ab1: 210668-214448

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001143_220 0.0 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
2 Hb_000260_550 0.0917894956 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
3 Hb_168878_010 0.098243469 - - 60S ribosomal protein L32A [Hevea brasiliensis]
4 Hb_001459_080 0.0997586175 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
5 Hb_007044_130 0.1030028818 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
6 Hb_002783_270 0.1030723333 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
7 Hb_001754_250 0.1091438489 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
8 Hb_000694_040 0.111688652 - - Uncharacterized protein isoform 1 [Theobroma cacao]
9 Hb_000025_230 0.1119258393 - - PREDICTED: 10 kDa chaperonin [Vitis vinifera]
10 Hb_003058_080 0.1130297476 - - Chaperonin 10 isoform 1 [Theobroma cacao]
11 Hb_000096_170 0.1140678403 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas]
12 Hb_004453_170 0.1161881053 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
13 Hb_003185_110 0.1179067789 - - PREDICTED: cytochrome b-c1 complex subunit 7-2 [Nelumbo nucifera]
14 Hb_002374_170 0.1201309762 - - 20S proteasome beta subunit C1 [Hevea brasiliensis]
15 Hb_047823_010 0.1206728911 - - hypothetical protein CARUB_v10024013mg [Capsella rubella]
16 Hb_021419_020 0.1218966875 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
17 Hb_001584_060 0.1226757214 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
18 Hb_004787_060 0.122796095 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
19 Hb_132840_140 0.1241888969 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
20 Hb_000134_320 0.1247276286 - - hypothetical protein PRUPE_ppa013450mg [Prunus persica]

Gene co-expression network

sample Hb_001143_220 Hb_001143_220 Hb_000260_550 Hb_000260_550 Hb_001143_220--Hb_000260_550 Hb_168878_010 Hb_168878_010 Hb_001143_220--Hb_168878_010 Hb_001459_080 Hb_001459_080 Hb_001143_220--Hb_001459_080 Hb_007044_130 Hb_007044_130 Hb_001143_220--Hb_007044_130 Hb_002783_270 Hb_002783_270 Hb_001143_220--Hb_002783_270 Hb_001754_250 Hb_001754_250 Hb_001143_220--Hb_001754_250 Hb_000096_170 Hb_000096_170 Hb_000260_550--Hb_000096_170 Hb_000260_550--Hb_007044_130 Hb_004453_170 Hb_004453_170 Hb_000260_550--Hb_004453_170 Hb_000127_180 Hb_000127_180 Hb_000260_550--Hb_000127_180 Hb_002518_080 Hb_002518_080 Hb_000260_550--Hb_002518_080 Hb_124953_020 Hb_124953_020 Hb_000260_550--Hb_124953_020 Hb_168878_010--Hb_001459_080 Hb_002374_170 Hb_002374_170 Hb_168878_010--Hb_002374_170 Hb_004787_060 Hb_004787_060 Hb_168878_010--Hb_004787_060 Hb_000025_230 Hb_000025_230 Hb_168878_010--Hb_000025_230 Hb_008112_040 Hb_008112_040 Hb_168878_010--Hb_008112_040 Hb_001459_080--Hb_002374_170 Hb_001459_080--Hb_004787_060 Hb_001459_080--Hb_000025_230 Hb_001459_080--Hb_000260_550 Hb_028841_030 Hb_028841_030 Hb_001459_080--Hb_028841_030 Hb_007044_130--Hb_002783_270 Hb_001141_140 Hb_001141_140 Hb_007044_130--Hb_001141_140 Hb_000062_650 Hb_000062_650 Hb_007044_130--Hb_000062_650 Hb_003894_070 Hb_003894_070 Hb_007044_130--Hb_003894_070 Hb_006925_040 Hb_006925_040 Hb_007044_130--Hb_006925_040 Hb_000046_560 Hb_000046_560 Hb_002783_270--Hb_000046_560 Hb_002783_270--Hb_006925_040 Hb_002783_270--Hb_003894_070 Hb_003058_080 Hb_003058_080 Hb_002783_270--Hb_003058_080 Hb_001341_090 Hb_001341_090 Hb_002783_270--Hb_001341_090 Hb_000134_320 Hb_000134_320 Hb_001754_250--Hb_000134_320 Hb_001754_250--Hb_000260_550 Hb_001754_250--Hb_001459_080 Hb_001754_250--Hb_168878_010 Hb_000694_040 Hb_000694_040 Hb_001754_250--Hb_000694_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
231.31 127.042 409.019 154.004 199.231 197.5
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
289.811 718.401 194.604 96.3064 33.1737

CAGE analysis