Hb_001144_030

Information

Type -
Description -
Location Contig1144: 26118-26549
Sequence    

Annotation

kegg
ID cic:CICLE_v10023280mg
description hypothetical protein
nr
ID XP_006442464.1
description hypothetical protein CICLE_v10023280mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4VRP0
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10023280mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001144_030 0.0 - - hypothetical protein CICLE_v10023280mg, partial [Citrus clementina]
2 Hb_000014_200 0.0777378534 - - PREDICTED: uncharacterized protein LOC105775355 [Gossypium raimondii]
3 Hb_002559_020 0.0796266047 transcription factor TF Family: TUB -
4 Hb_060783_010 0.0963331815 - - Chloride channel protein CLC-c [Populus trichocarpa]
5 Hb_005207_040 0.1013196467 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Cicer arietinum]
6 Hb_036790_050 0.1060878932 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
7 Hb_169960_010 0.1198219675 - - -
8 Hb_000685_100 0.1535786596 - - hypothetical protein POPTR_0001s10630g [Populus trichocarpa]
9 Hb_005116_040 0.1589551581 - - PREDICTED: uncharacterized protein LOC105131445 [Populus euphratica]
10 Hb_000034_060 0.1606492481 - - PREDICTED: O-acyltransferase WSD1-like [Citrus sinensis]
11 Hb_003688_120 0.1617523089 - - PREDICTED: uncharacterized protein LOC105350793 [Fragaria vesca subsp. vesca]
12 Hb_000300_650 0.1757807025 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
13 Hb_012077_010 0.1768854996 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
14 Hb_001210_120 0.1774224707 - - hypothetical protein JCGZ_06226 [Jatropha curcas]
15 Hb_002808_010 0.1793153806 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
16 Hb_014102_010 0.1794139619 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_184074_010 0.17991527 - - PREDICTED: uncharacterized protein LOC105639054 [Jatropha curcas]
18 Hb_001019_030 0.186220401 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
19 Hb_105885_010 0.1903491512 - - PREDICTED: uncharacterized protein LOC103441690 [Malus domestica]
20 Hb_003371_280 0.1914501418 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_001144_030 Hb_001144_030 Hb_000014_200 Hb_000014_200 Hb_001144_030--Hb_000014_200 Hb_002559_020 Hb_002559_020 Hb_001144_030--Hb_002559_020 Hb_060783_010 Hb_060783_010 Hb_001144_030--Hb_060783_010 Hb_005207_040 Hb_005207_040 Hb_001144_030--Hb_005207_040 Hb_036790_050 Hb_036790_050 Hb_001144_030--Hb_036790_050 Hb_169960_010 Hb_169960_010 Hb_001144_030--Hb_169960_010 Hb_000014_200--Hb_169960_010 Hb_000014_200--Hb_005207_040 Hb_000014_200--Hb_002559_020 Hb_000300_650 Hb_000300_650 Hb_000014_200--Hb_000300_650 Hb_000014_200--Hb_060783_010 Hb_002559_020--Hb_060783_010 Hb_002559_020--Hb_005207_040 Hb_002559_020--Hb_036790_050 Hb_003688_120 Hb_003688_120 Hb_002559_020--Hb_003688_120 Hb_014102_010 Hb_014102_010 Hb_002559_020--Hb_014102_010 Hb_060783_010--Hb_036790_050 Hb_060783_010--Hb_005207_040 Hb_060783_010--Hb_003688_120 Hb_060783_010--Hb_014102_010 Hb_005207_040--Hb_003688_120 Hb_005207_040--Hb_014102_010 Hb_005207_040--Hb_169960_010 Hb_036790_050--Hb_005207_040 Hb_188281_020 Hb_188281_020 Hb_036790_050--Hb_188281_020 Hb_105885_010 Hb_105885_010 Hb_036790_050--Hb_105885_010 Hb_169960_010--Hb_003688_120 Hb_169960_010--Hb_014102_010 Hb_169960_010--Hb_002559_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.535764 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.114701 0.244191

CAGE analysis