Hb_001146_060

Information

Type transcription factor
Description TF Family: bHLH
Location Contig1146: 86797-88224
Sequence    

Annotation

kegg
ID sly:101250434
description transcription factor bHLH14-like
nr
ID AEG74015.1
description lMYC5 [Hevea brasiliensis]
swissprot
ID O49687
description Transcription factor MYC4 OS=Arabidopsis thaliana GN=MYC4 PE=1 SV=1
trembl
ID I3NR03
description LMYC5 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0046983
description transcription factor myc2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001146_060 0.0 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
2 Hb_002588_040 0.0708439143 - - Pathogenesis-related protein 1 [Theobroma cacao]
3 Hb_001369_210 0.1086911782 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
4 Hb_001348_230 0.1263681894 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
5 Hb_000352_160 0.1273899979 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000563_260 0.1398641438 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
7 Hb_001767_050 0.1683706687 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001247_330 0.1734362014 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
9 Hb_004994_110 0.1871272687 - - -
10 Hb_002725_060 0.1876369668 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
11 Hb_002150_050 0.2013151738 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000703_050 0.2044518325 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000962_080 0.2101635922 - - PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
14 Hb_089100_050 0.2190438479 - - -
15 Hb_000249_120 0.2198060061 - - PREDICTED: uncharacterized protein LOC104613364 [Nelumbo nucifera]
16 Hb_010589_050 0.2207975739 - - -
17 Hb_027337_120 0.2250108998 - - PREDICTED: uncharacterized protein LOC104430249 [Eucalyptus grandis]
18 Hb_167711_040 0.2294379667 - - PREDICTED: cucumisin-like [Jatropha curcas]
19 Hb_007426_050 0.2307062267 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
20 Hb_061383_010 0.2307753106 - - beta-1,3-glucanase [Hevea brasiliensis]

Gene co-expression network

sample Hb_001146_060 Hb_001146_060 Hb_002588_040 Hb_002588_040 Hb_001146_060--Hb_002588_040 Hb_001369_210 Hb_001369_210 Hb_001146_060--Hb_001369_210 Hb_001348_230 Hb_001348_230 Hb_001146_060--Hb_001348_230 Hb_000352_160 Hb_000352_160 Hb_001146_060--Hb_000352_160 Hb_000563_260 Hb_000563_260 Hb_001146_060--Hb_000563_260 Hb_001767_050 Hb_001767_050 Hb_001146_060--Hb_001767_050 Hb_002588_040--Hb_001348_230 Hb_002588_040--Hb_000352_160 Hb_002588_040--Hb_001369_210 Hb_002588_040--Hb_000563_260 Hb_002588_040--Hb_001767_050 Hb_001369_210--Hb_000352_160 Hb_001369_210--Hb_001348_230 Hb_001369_210--Hb_001767_050 Hb_001369_210--Hb_000563_260 Hb_001348_230--Hb_000352_160 Hb_001348_230--Hb_000563_260 Hb_001143_070 Hb_001143_070 Hb_001348_230--Hb_001143_070 Hb_000352_160--Hb_001767_050 Hb_000352_160--Hb_001143_070 Hb_000563_260--Hb_000352_160 Hb_029879_090 Hb_029879_090 Hb_000563_260--Hb_029879_090 Hb_000962_080 Hb_000962_080 Hb_001767_050--Hb_000962_080 Hb_001247_330 Hb_001247_330 Hb_001767_050--Hb_001247_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.507245 0 0.0107991 0.0116192 0 0.0146601
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.16502 107.011 50.4213 6.52331 0

CAGE analysis