Hb_001146_070

Information

Type transcription factor
Description TF Family: bHLH
Location Contig1146: 99321-100733
Sequence    

Annotation

kegg
ID rcu:RCOM_1313580
description DNA binding protein, putative (EC:1.3.1.74)
nr
ID ADK91082.1
description LMYC2 [Hevea brasiliensis]
swissprot
ID O23487
description Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2 SV=1
trembl
ID G3CEP4
description LMYC2 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0046983
description transcription factor myc2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04427: 99116-101057
cDNA
(Sanger)
(ID:Location)		 004_P12.ab1: 99115-99928 , 010_N19.ab1: 99116-99844 , 028_J20.ab1: 99116-99827 , 032_B10.ab1: 99116-99885 , 035_P11.ab1: 99116-99871 , 039_I19.ab1: 99118-99787 , 045_A08.ab1: 99116-99862 , 046_B11.ab1: 99118-99867

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001146_070 0.0 transcription factor TF Family: bHLH LMYC2 [Hevea brasiliensis]
2 Hb_005271_030 0.0902262964 - - copper-transporting atpase p-type, putative [Ricinus communis]
3 Hb_000175_530 0.1048688987 - - PREDICTED: uncharacterized protein LOC105136409 [Populus euphratica]
4 Hb_029464_010 0.1145536174 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
5 Hb_064201_010 0.1163471895 - - hypothetical protein RCOM_1685970 [Ricinus communis]
6 Hb_007158_030 0.124255617 - - UDP-glucosyltransferase, putative [Ricinus communis]
7 Hb_001017_100 0.1253956265 - - PREDICTED: uncharacterized protein LOC105644705 [Jatropha curcas]
8 Hb_000329_620 0.1320714072 - - PREDICTED: uncharacterized protein LOC105643215 [Jatropha curcas]
9 Hb_001268_230 0.1337072314 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
10 Hb_009193_130 0.141827936 - - hypothetical protein RCOM_1620550 [Ricinus communis]
11 Hb_000454_030 0.1440482638 - - -
12 Hb_000352_130 0.1451896402 - - hypothetical protein CISIN_1g0419111mg, partial [Citrus sinensis]
13 Hb_001628_110 0.146095878 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
14 Hb_003226_170 0.1614553415 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
15 Hb_043637_010 0.1632459752 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
16 Hb_000580_060 0.1659872315 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
17 Hb_156144_020 0.1673229003 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
18 Hb_002506_110 0.1684825764 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
19 Hb_001846_080 0.168530846 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
20 Hb_000441_230 0.1692891819 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_001146_070 Hb_001146_070 Hb_005271_030 Hb_005271_030 Hb_001146_070--Hb_005271_030 Hb_000175_530 Hb_000175_530 Hb_001146_070--Hb_000175_530 Hb_029464_010 Hb_029464_010 Hb_001146_070--Hb_029464_010 Hb_064201_010 Hb_064201_010 Hb_001146_070--Hb_064201_010 Hb_007158_030 Hb_007158_030 Hb_001146_070--Hb_007158_030 Hb_001017_100 Hb_001017_100 Hb_001146_070--Hb_001017_100 Hb_005271_030--Hb_029464_010 Hb_009193_130 Hb_009193_130 Hb_005271_030--Hb_009193_130 Hb_005271_030--Hb_007158_030 Hb_002506_110 Hb_002506_110 Hb_005271_030--Hb_002506_110 Hb_005271_030--Hb_001017_100 Hb_000454_030 Hb_000454_030 Hb_000175_530--Hb_000454_030 Hb_000329_540 Hb_000329_540 Hb_000175_530--Hb_000329_540 Hb_000441_230 Hb_000441_230 Hb_000175_530--Hb_000441_230 Hb_005568_070 Hb_005568_070 Hb_000175_530--Hb_005568_070 Hb_000580_060 Hb_000580_060 Hb_000175_530--Hb_000580_060 Hb_029464_010--Hb_007158_030 Hb_029464_010--Hb_009193_130 Hb_000329_620 Hb_000329_620 Hb_029464_010--Hb_000329_620 Hb_000856_100 Hb_000856_100 Hb_029464_010--Hb_000856_100 Hb_064201_010--Hb_005271_030 Hb_064201_010--Hb_000329_620 Hb_003376_170 Hb_003376_170 Hb_064201_010--Hb_003376_170 Hb_000352_130 Hb_000352_130 Hb_064201_010--Hb_000352_130 Hb_000061_410 Hb_000061_410 Hb_064201_010--Hb_000061_410 Hb_007158_030--Hb_009193_130 Hb_007158_030--Hb_000329_620 Hb_007158_030--Hb_002506_110 Hb_000603_200 Hb_000603_200 Hb_007158_030--Hb_000603_200 Hb_001017_100--Hb_002506_110 Hb_000161_100 Hb_000161_100 Hb_001017_100--Hb_000161_100 Hb_000018_160 Hb_000018_160 Hb_001017_100--Hb_000018_160 Hb_001017_100--Hb_000441_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3257.98 102.818 10.9735 60.9783 5052.98 3662.55
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
822.298 561.633 453.02 114.753 8.67925

CAGE analysis