Hb_001146_090

Information

Type -
Description -
Location Contig1146: 131690-134979
Sequence    

Annotation

kegg
ID rcu:RCOM_1313590
description valacyclovir hydrolase, putative
nr
ID XP_002518915.1
description valacyclovir hydrolase, putative [Ricinus communis]
swissprot
ID P19076
description 2-hydroxymuconate semialdehyde hydrolase OS=Pseudomonas sp. (strain CF600) GN=dmpD PE=3 SV=1
trembl
ID B9RYU6
description Valacyclovir hydrolase, putative OS=Ricinus communis GN=RCOM_1313590 PE=4 SV=1
Gene Ontology
ID GO:0016787
description hydrolase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04428: 131736-135190
cDNA
(Sanger)
(ID:Location)		 050_A21.ab1: 134412-135190

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001146_090 0.0 - - valacyclovir hydrolase, putative [Ricinus communis]
2 Hb_002843_090 0.2884812879 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
3 Hb_000858_040 0.3113858542 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
4 Hb_000364_070 0.3228855865 transcription factor TF Family: AP2 PREDICTED: floral homeotic protein APETALA 2 isoform X1 [Jatropha curcas]
5 Hb_000261_270 0.3255759397 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
6 Hb_059301_010 0.3269423821 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
7 Hb_021650_050 0.3318133772 - - hypothetical protein RCOM_0852210 [Ricinus communis]
8 Hb_014919_020 0.3354762987 - - -
9 Hb_000984_250 0.3382476541 - - PREDICTED: uncharacterized protein LOC105630783 [Jatropha curcas]
10 Hb_002325_030 0.3401689525 - - PREDICTED: glucan endo-1,3-beta-glucosidase 2 [Jatropha curcas]
11 Hb_045481_010 0.3402751771 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
12 Hb_068347_010 0.3413747943 - - -
13 Hb_167508_010 0.3500930993 - - hypothetical protein POPTR_0001s27330g [Populus trichocarpa]
14 Hb_096473_010 0.3505412125 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
15 Hb_001675_120 0.3516905198 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
16 Hb_075351_010 0.3567649933 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
17 Hb_002232_070 0.3569410044 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220 [Malus domestica]
18 Hb_011377_010 0.3577920483 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
19 Hb_118346_010 0.3590965539 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
20 Hb_000842_060 0.3596488208 - - PREDICTED: uncharacterized protein LOC105636760 [Jatropha curcas]

Gene co-expression network

sample Hb_001146_090 Hb_001146_090 Hb_002843_090 Hb_002843_090 Hb_001146_090--Hb_002843_090 Hb_000858_040 Hb_000858_040 Hb_001146_090--Hb_000858_040 Hb_000364_070 Hb_000364_070 Hb_001146_090--Hb_000364_070 Hb_000261_270 Hb_000261_270 Hb_001146_090--Hb_000261_270 Hb_059301_010 Hb_059301_010 Hb_001146_090--Hb_059301_010 Hb_021650_050 Hb_021650_050 Hb_001146_090--Hb_021650_050 Hb_068347_010 Hb_068347_010 Hb_002843_090--Hb_068347_010 Hb_167508_010 Hb_167508_010 Hb_002843_090--Hb_167508_010 Hb_000842_060 Hb_000842_060 Hb_002843_090--Hb_000842_060 Hb_002232_300 Hb_002232_300 Hb_002843_090--Hb_002232_300 Hb_011903_010 Hb_011903_010 Hb_002843_090--Hb_011903_010 Hb_000984_250 Hb_000984_250 Hb_002843_090--Hb_000984_250 Hb_000858_040--Hb_000261_270 Hb_002450_160 Hb_002450_160 Hb_000858_040--Hb_002450_160 Hb_009730_010 Hb_009730_010 Hb_000858_040--Hb_009730_010 Hb_001882_140 Hb_001882_140 Hb_000858_040--Hb_001882_140 Hb_002235_090 Hb_002235_090 Hb_000858_040--Hb_002235_090 Hb_011537_070 Hb_011537_070 Hb_000364_070--Hb_011537_070 Hb_116125_010 Hb_116125_010 Hb_000364_070--Hb_116125_010 Hb_002735_040 Hb_002735_040 Hb_000364_070--Hb_002735_040 Hb_000270_210 Hb_000270_210 Hb_000364_070--Hb_000270_210 Hb_000364_070--Hb_000984_250 Hb_001952_130 Hb_001952_130 Hb_000364_070--Hb_001952_130 Hb_000261_270--Hb_009730_010 Hb_000261_270--Hb_002235_090 Hb_000261_270--Hb_002450_160 Hb_000261_270--Hb_001882_140 Hb_045481_010 Hb_045481_010 Hb_059301_010--Hb_045481_010 Hb_014919_020 Hb_014919_020 Hb_059301_010--Hb_014919_020 Hb_003740_010 Hb_003740_010 Hb_059301_010--Hb_003740_010 Hb_000816_010 Hb_000816_010 Hb_059301_010--Hb_000816_010 Hb_000123_100 Hb_000123_100 Hb_059301_010--Hb_000123_100 Hb_160233_020 Hb_160233_020 Hb_059301_010--Hb_160233_020 Hb_000589_370 Hb_000589_370 Hb_021650_050--Hb_000589_370 Hb_075351_010 Hb_075351_010 Hb_021650_050--Hb_075351_010 Hb_004524_060 Hb_004524_060 Hb_021650_050--Hb_004524_060 Hb_002234_230 Hb_002234_230 Hb_021650_050--Hb_002234_230 Hb_004117_250 Hb_004117_250 Hb_021650_050--Hb_004117_250 Hb_003292_060 Hb_003292_060 Hb_021650_050--Hb_003292_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.81084 0.411354 2.95192 0.307385 0.574813 0.0352449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.30639 0.139455

CAGE analysis