Hb_001147_050

Information

Type -
Description -
Location Contig1147: 70819-74824
Sequence    

Annotation

kegg
ID pop:POPTR_0018s13400g
description POPTRDRAFT_911003; hypothetical protein
nr
ID XP_012079696.1
description PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
swissprot
ID P46573
description Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2
trembl
ID A0A067K618
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14807 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04441: 70795-74119 , PASA_asmbl_04442: 72861-73301
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001147_050 0.0 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
2 Hb_001269_620 0.0797369399 - - PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]
3 Hb_000330_090 0.0918312053 - - ornithine carbamoyltransferase, putative [Ricinus communis]
4 Hb_002693_030 0.093300604 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
5 Hb_002232_430 0.0972353602 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
6 Hb_001277_050 0.0984387065 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
7 Hb_006637_030 0.0992515167 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
8 Hb_000193_260 0.1009699385 - - PREDICTED: protein NEN1 [Jatropha curcas]
9 Hb_005686_130 0.1065105348 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
10 Hb_049575_010 0.1085091864 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
11 Hb_002534_130 0.1097957667 - - membrane associated ring finger 1,8, putative [Ricinus communis]
12 Hb_004218_010 0.1118899136 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
13 Hb_000189_570 0.1134880582 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
14 Hb_003913_130 0.1139982534 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
15 Hb_004429_020 0.1145142819 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
16 Hb_000723_230 0.1164554384 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
17 Hb_000638_130 0.1175436878 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
18 Hb_000235_070 0.1181518884 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
19 Hb_001014_060 0.1182331964 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
20 Hb_004123_020 0.119141546 - - amino acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001147_050 Hb_001147_050 Hb_001269_620 Hb_001269_620 Hb_001147_050--Hb_001269_620 Hb_000330_090 Hb_000330_090 Hb_001147_050--Hb_000330_090 Hb_002693_030 Hb_002693_030 Hb_001147_050--Hb_002693_030 Hb_002232_430 Hb_002232_430 Hb_001147_050--Hb_002232_430 Hb_001277_050 Hb_001277_050 Hb_001147_050--Hb_001277_050 Hb_006637_030 Hb_006637_030 Hb_001147_050--Hb_006637_030 Hb_001269_620--Hb_001277_050 Hb_005686_130 Hb_005686_130 Hb_001269_620--Hb_005686_130 Hb_000088_260 Hb_000088_260 Hb_001269_620--Hb_000088_260 Hb_049575_010 Hb_049575_010 Hb_001269_620--Hb_049575_010 Hb_000235_070 Hb_000235_070 Hb_001269_620--Hb_000235_070 Hb_000330_090--Hb_049575_010 Hb_000174_260 Hb_000174_260 Hb_000330_090--Hb_000174_260 Hb_001269_130 Hb_001269_130 Hb_000330_090--Hb_001269_130 Hb_000330_090--Hb_002693_030 Hb_007904_230 Hb_007904_230 Hb_000330_090--Hb_007904_230 Hb_007199_020 Hb_007199_020 Hb_000330_090--Hb_007199_020 Hb_002693_030--Hb_006637_030 Hb_007850_030 Hb_007850_030 Hb_002693_030--Hb_007850_030 Hb_053709_050 Hb_053709_050 Hb_002693_030--Hb_053709_050 Hb_002534_130 Hb_002534_130 Hb_002693_030--Hb_002534_130 Hb_026198_010 Hb_026198_010 Hb_002693_030--Hb_026198_010 Hb_002232_430--Hb_006637_030 Hb_000684_040 Hb_000684_040 Hb_002232_430--Hb_000684_040 Hb_000465_150 Hb_000465_150 Hb_002232_430--Hb_000465_150 Hb_002232_430--Hb_005686_130 Hb_000638_130 Hb_000638_130 Hb_002232_430--Hb_000638_130 Hb_001277_050--Hb_005686_130 Hb_001277_050--Hb_000088_260 Hb_001277_050--Hb_000638_130 Hb_001277_050--Hb_002534_130 Hb_000723_230 Hb_000723_230 Hb_006637_030--Hb_000723_230 Hb_006637_030--Hb_053709_050 Hb_006637_030--Hb_026198_010 Hb_189216_010 Hb_189216_010 Hb_006637_030--Hb_189216_010 Hb_005653_070 Hb_005653_070 Hb_006637_030--Hb_005653_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.42822 7.3244 15.6466 8.81932 2.18555 2.32007
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.63427 10.1171 8.6332 8.32978 8.53945

CAGE analysis