Hb_001148_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1148: 20631-21652
Sequence    

Annotation

kegg
ID rcu:RCOM_0496700
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID XP_012066789.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID B9SPC3
description Leucine-rich repeat containing protein, putative OS=Ricinus communis GN=RCOM_0496700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001148_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_003653_040 0.0031559163 - - hypothetical protein SORBIDRAFT_05g024215 [Sorghum bicolor]
3 Hb_135174_010 0.0077416733 - - Glycosyl hydrolase family protein 43 isoform 2 [Theobroma cacao]
4 Hb_004528_030 0.0077663315 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
5 Hb_001140_310 0.0077705937 - - hypothetical protein AMTR_s00025p00025050 [Amborella trichopoda]
6 Hb_008021_030 0.0087301878 - - short-chain dehydrogenase, putative [Ricinus communis]
7 Hb_020956_050 0.0117303905 - - PREDICTED: uncharacterized protein LOC102670328 [Glycine max]
8 Hb_003060_130 0.0157672875 - - PREDICTED: protein P21-like [Jatropha curcas]
9 Hb_000202_110 0.0162493911 - - PREDICTED: uncharacterized protein LOC103948916 [Pyrus x bretschneideri]
10 Hb_001192_020 0.0228860726 - - -
11 Hb_003370_040 0.0245942537 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
12 Hb_000088_280 0.028972569 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
13 Hb_020332_020 0.0318911802 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
14 Hb_187301_010 0.0324487531 - - PREDICTED: uncharacterized protein LOC105629082 [Jatropha curcas]
15 Hb_011540_050 0.0327443251 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_000152_400 0.0341567266 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
17 Hb_025654_010 0.0342627328 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
18 Hb_032050_030 0.0438463219 - - C, putative [Ricinus communis]
19 Hb_004466_080 0.0481772433 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
20 Hb_030370_080 0.058689689 - - hypothetical protein SELMODRAFT_100988 [Selaginella moellendorffii]

Gene co-expression network

sample Hb_001148_010 Hb_001148_010 Hb_003653_040 Hb_003653_040 Hb_001148_010--Hb_003653_040 Hb_135174_010 Hb_135174_010 Hb_001148_010--Hb_135174_010 Hb_004528_030 Hb_004528_030 Hb_001148_010--Hb_004528_030 Hb_001140_310 Hb_001140_310 Hb_001148_010--Hb_001140_310 Hb_008021_030 Hb_008021_030 Hb_001148_010--Hb_008021_030 Hb_020956_050 Hb_020956_050 Hb_001148_010--Hb_020956_050 Hb_003653_040--Hb_135174_010 Hb_003653_040--Hb_004528_030 Hb_003653_040--Hb_001140_310 Hb_003653_040--Hb_008021_030 Hb_003653_040--Hb_020956_050 Hb_135174_010--Hb_004528_030 Hb_135174_010--Hb_001140_310 Hb_135174_010--Hb_008021_030 Hb_135174_010--Hb_020956_050 Hb_004528_030--Hb_001140_310 Hb_004528_030--Hb_008021_030 Hb_004528_030--Hb_020956_050 Hb_001140_310--Hb_008021_030 Hb_001140_310--Hb_020956_050 Hb_008021_030--Hb_020956_050 Hb_001192_020 Hb_001192_020 Hb_020956_050--Hb_001192_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.021298 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0888287

CAGE analysis