Hb_001148_050

Information

Type -
Description -
Location Contig1148: 52543-58341
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04460: 54577-54872 , PASA_asmbl_04462: 56937-57040 , PASA_asmbl_04463: 56719-57355
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001148_050 0.0 - - -
2 Hb_011452_020 0.1450688574 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 4 [Jatropha curcas]
3 Hb_000077_450 0.1503483703 - - o-methyltransferase, putative [Ricinus communis]
4 Hb_011139_010 0.1533989443 - - o-methyltransferase, putative [Ricinus communis]
5 Hb_003435_070 0.1719950194 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
6 Hb_008727_030 0.1797181637 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002900_040 0.1853520472 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
8 Hb_000207_340 0.1902055286 transcription factor TF Family: GRAS hypothetical protein POPTR_0013s11930g [Populus trichocarpa]
9 Hb_022181_010 0.1911641656 - - PREDICTED: peroxidase 19 [Jatropha curcas]
10 Hb_000676_380 0.1924122707 - - cytochrome P450 family protein [Populus trichocarpa]
11 Hb_003789_020 0.1936597424 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
12 Hb_003177_080 0.1968120392 - - hypothetical protein L484_016032 [Morus notabilis]
13 Hb_000967_010 0.1971810312 - - hypothetical protein JCGZ_08336 [Jatropha curcas]
14 Hb_001360_060 0.1987125725 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
15 Hb_005144_180 0.2006827595 - - PREDICTED: protein enabled homolog [Populus euphratica]
16 Hb_001775_130 0.202641767 - - Prephenate dehydratase [Hevea brasiliensis]
17 Hb_135811_040 0.2035436595 - - conserved hypothetical protein [Ricinus communis]
18 Hb_021418_010 0.2040812412 - - PREDICTED: probable pectate lyase 12 [Prunus mume]
19 Hb_002876_190 0.2069789123 transcription factor TF Family: GRAS hypothetical protein PRUPE_ppa017519mg [Prunus persica]
20 Hb_182831_020 0.2073108425 - - multidrug resistance pump, putative [Ricinus communis]

Gene co-expression network

sample Hb_001148_050 Hb_001148_050 Hb_011452_020 Hb_011452_020 Hb_001148_050--Hb_011452_020 Hb_000077_450 Hb_000077_450 Hb_001148_050--Hb_000077_450 Hb_011139_010 Hb_011139_010 Hb_001148_050--Hb_011139_010 Hb_003435_070 Hb_003435_070 Hb_001148_050--Hb_003435_070 Hb_008727_030 Hb_008727_030 Hb_001148_050--Hb_008727_030 Hb_002900_040 Hb_002900_040 Hb_001148_050--Hb_002900_040 Hb_011452_020--Hb_000077_450 Hb_000967_010 Hb_000967_010 Hb_011452_020--Hb_000967_010 Hb_021418_010 Hb_021418_010 Hb_011452_020--Hb_021418_010 Hb_006120_010 Hb_006120_010 Hb_011452_020--Hb_006120_010 Hb_011452_020--Hb_008727_030 Hb_011452_020--Hb_003435_070 Hb_000077_450--Hb_021418_010 Hb_000077_450--Hb_006120_010 Hb_000077_450--Hb_000967_010 Hb_010571_010 Hb_010571_010 Hb_000077_450--Hb_010571_010 Hb_003058_180 Hb_003058_180 Hb_000077_450--Hb_003058_180 Hb_003789_020 Hb_003789_020 Hb_011139_010--Hb_003789_020 Hb_182831_020 Hb_182831_020 Hb_011139_010--Hb_182831_020 Hb_011139_010--Hb_008727_030 Hb_030394_050 Hb_030394_050 Hb_011139_010--Hb_030394_050 Hb_000676_380 Hb_000676_380 Hb_011139_010--Hb_000676_380 Hb_161346_010 Hb_161346_010 Hb_011139_010--Hb_161346_010 Hb_005333_120 Hb_005333_120 Hb_003435_070--Hb_005333_120 Hb_003435_070--Hb_000967_010 Hb_001856_150 Hb_001856_150 Hb_003435_070--Hb_001856_150 Hb_118707_020 Hb_118707_020 Hb_003435_070--Hb_118707_020 Hb_003435_070--Hb_003058_180 Hb_003435_070--Hb_008727_030 Hb_008727_030--Hb_000967_010 Hb_008727_030--Hb_118707_020 Hb_008727_030--Hb_003789_020 Hb_005144_180 Hb_005144_180 Hb_008727_030--Hb_005144_180 Hb_001430_090 Hb_001430_090 Hb_002900_040--Hb_001430_090 Hb_000982_120 Hb_000982_120 Hb_002900_040--Hb_000982_120 Hb_000163_010 Hb_000163_010 Hb_002900_040--Hb_000163_010 Hb_031931_030 Hb_031931_030 Hb_002900_040--Hb_031931_030 Hb_150084_010 Hb_150084_010 Hb_002900_040--Hb_150084_010 Hb_001863_080 Hb_001863_080 Hb_002900_040--Hb_001863_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.213129 0 2.95394 0.172664 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.55833 0.50481

CAGE analysis