Hb_001150_030

Information

Type -
Description -
Location Contig1150: 19058-20174
Sequence    

Annotation

kegg
ID tcc:TCM_011906
description NADP-dependent oxidoreductase P1 isoform 1
nr
ID XP_007046373.1
description NADP-dependent oxidoreductase P1 isoform 3 [Theobroma cacao]
swissprot
ID P76113
description NADPH-dependent curcumin reductase OS=Escherichia coli (strain K12) GN=curA PE=1 SV=3
trembl
ID A0A061EB66
description NADP-dependent oxidoreductase P1 isoform 3 OS=Theobroma cacao GN=TCM_011906 PE=4 SV=1
Gene Ontology
ID GO:0008270
description 2-alkenal reductase (nadp(+)-dependent)-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04555: 18936-38544
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001150_030 0.0 - - NADP-dependent oxidoreductase P1 isoform 3 [Theobroma cacao]
2 Hb_012660_020 0.1601469008 - - -
3 Hb_003878_030 0.1721510239 - - hypothetical protein POPTR_0011s11120g [Populus trichocarpa]
4 Hb_002943_030 0.1920013299 - - -
5 Hb_003647_030 0.2000211203 - - PREDICTED: probable glutathione S-transferase [Populus euphratica]
6 Hb_002609_060 0.2079377881 - - PREDICTED: sugar transport protein 8-like [Jatropha curcas]
7 Hb_000098_220 0.2117941478 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
8 Hb_000723_160 0.2118104792 transcription factor TF Family: TCP PREDICTED: transcription factor TCP11 [Jatropha curcas]
9 Hb_005214_130 0.2176579554 - - -
10 Hb_000742_110 0.218189495 - - hypothetical protein JCGZ_09215 [Jatropha curcas]
11 Hb_001150_040 0.2230488424 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Solanum lycopersicum]
12 Hb_010560_040 0.2245672996 - - PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Jatropha curcas]
13 Hb_000907_170 0.2270633113 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
14 Hb_001005_070 0.233613628 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
15 Hb_002138_010 0.2346881645 - - hypothetical protein POPTR_0001s30620g [Populus trichocarpa]
16 Hb_001538_140 0.2354942993 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
17 Hb_000616_040 0.2365766762 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
18 Hb_004738_020 0.2385749298 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000316_020 0.2392487779 - - protein binding protein, putative [Ricinus communis]
20 Hb_012239_100 0.2405569052 - - hypothetical protein VITISV_043897 [Vitis vinifera]

Gene co-expression network

sample Hb_001150_030 Hb_001150_030 Hb_012660_020 Hb_012660_020 Hb_001150_030--Hb_012660_020 Hb_003878_030 Hb_003878_030 Hb_001150_030--Hb_003878_030 Hb_002943_030 Hb_002943_030 Hb_001150_030--Hb_002943_030 Hb_003647_030 Hb_003647_030 Hb_001150_030--Hb_003647_030 Hb_002609_060 Hb_002609_060 Hb_001150_030--Hb_002609_060 Hb_000098_220 Hb_000098_220 Hb_001150_030--Hb_000098_220 Hb_012660_020--Hb_003878_030 Hb_075653_020 Hb_075653_020 Hb_012660_020--Hb_075653_020 Hb_000363_010 Hb_000363_010 Hb_012660_020--Hb_000363_010 Hb_005618_040 Hb_005618_040 Hb_012660_020--Hb_005618_040 Hb_000107_370 Hb_000107_370 Hb_012660_020--Hb_000107_370 Hb_003878_030--Hb_000363_010 Hb_000436_010 Hb_000436_010 Hb_003878_030--Hb_000436_010 Hb_000723_160 Hb_000723_160 Hb_003878_030--Hb_000723_160 Hb_002138_010 Hb_002138_010 Hb_003878_030--Hb_002138_010 Hb_002943_030--Hb_000098_220 Hb_105712_010 Hb_105712_010 Hb_002943_030--Hb_105712_010 Hb_002943_030--Hb_012660_020 Hb_150751_010 Hb_150751_010 Hb_002943_030--Hb_150751_010 Hb_081504_010 Hb_081504_010 Hb_002943_030--Hb_081504_010 Hb_004242_190 Hb_004242_190 Hb_003647_030--Hb_004242_190 Hb_001258_060 Hb_001258_060 Hb_003647_030--Hb_001258_060 Hb_028872_060 Hb_028872_060 Hb_003647_030--Hb_028872_060 Hb_004668_100 Hb_004668_100 Hb_003647_030--Hb_004668_100 Hb_003120_030 Hb_003120_030 Hb_003647_030--Hb_003120_030 Hb_000907_170 Hb_000907_170 Hb_002609_060--Hb_000907_170 Hb_145084_010 Hb_145084_010 Hb_002609_060--Hb_145084_010 Hb_000742_110 Hb_000742_110 Hb_002609_060--Hb_000742_110 Hb_010560_040 Hb_010560_040 Hb_002609_060--Hb_010560_040 Hb_000363_200 Hb_000363_200 Hb_002609_060--Hb_000363_200 Hb_002719_080 Hb_002719_080 Hb_002609_060--Hb_002719_080 Hb_001623_430 Hb_001623_430 Hb_000098_220--Hb_001623_430 Hb_004650_100 Hb_004650_100 Hb_000098_220--Hb_004650_100 Hb_000098_220--Hb_075653_020 Hb_000106_100 Hb_000106_100 Hb_000098_220--Hb_000106_100 Hb_000098_220--Hb_002609_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.1728 8.21029 0.160129 1.44291 10.1498 25.0071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.0131 35.3556 68.639 79.7504 0.145845

CAGE analysis