Hb_001150_040

Information

Type -
Description -
Location Contig1150: 36183-38201
Sequence    

Annotation

kegg
ID sly:101244392
description 2-alkenal reductase (NADP(+)-dependent)-like
nr
ID XP_004243606.1
description PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Solanum lycopersicum]
swissprot
ID Q6WAU0
description (+)-pulegone reductase OS=Mentha piperita PE=1 SV=1
trembl
ID K4CER7
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc07g045090.2 PE=4 SV=1
Gene Ontology
ID GO:0008270
description 2-alkenal reductase (nadp(+)-dependent)-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04555: 18936-38544
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001150_040 0.0 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Solanum lycopersicum]
2 Hb_004738_020 0.1311828391 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000203_180 0.1461110466 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
4 Hb_028872_060 0.1487442368 - - PREDICTED: ankyrin-3-like [Jatropha curcas]
5 Hb_004225_180 0.1627448194 - - bel1 homeotic protein, putative [Ricinus communis]
6 Hb_000640_300 0.1651187785 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
7 Hb_012052_060 0.1822231688 - - hypothetical protein POPTR_0018s10190g [Populus trichocarpa]
8 Hb_143629_040 0.1855719807 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000703_250 0.191616368 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Jatropha curcas]
10 Hb_000109_240 0.1941269766 - - PREDICTED: uncharacterized protein LOC102615432 [Citrus sinensis]
11 Hb_012660_020 0.1975353971 - - -
12 Hb_000329_650 0.1979800453 - - hypothetical protein POPTR_0014s056001g, partial [Populus trichocarpa]
13 Hb_004230_040 0.1988094225 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001472_120 0.2016446193 - - -
15 Hb_004718_020 0.2041794162 - - Potassium channel KAT3, putative [Ricinus communis]
16 Hb_000877_060 0.2045485481 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
17 Hb_001279_140 0.2053274153 - - PREDICTED: cystinosin homolog [Jatropha curcas]
18 Hb_002333_080 0.2055203199 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20-like [Populus euphratica]
19 Hb_004242_190 0.2094200619 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
20 Hb_011472_040 0.2101633147 - - PREDICTED: clathrin light chain 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001150_040 Hb_001150_040 Hb_004738_020 Hb_004738_020 Hb_001150_040--Hb_004738_020 Hb_000203_180 Hb_000203_180 Hb_001150_040--Hb_000203_180 Hb_028872_060 Hb_028872_060 Hb_001150_040--Hb_028872_060 Hb_004225_180 Hb_004225_180 Hb_001150_040--Hb_004225_180 Hb_000640_300 Hb_000640_300 Hb_001150_040--Hb_000640_300 Hb_012052_060 Hb_012052_060 Hb_001150_040--Hb_012052_060 Hb_004738_020--Hb_004225_180 Hb_004738_020--Hb_000640_300 Hb_000703_240 Hb_000703_240 Hb_004738_020--Hb_000703_240 Hb_155123_010 Hb_155123_010 Hb_004738_020--Hb_155123_010 Hb_001959_040 Hb_001959_040 Hb_004738_020--Hb_001959_040 Hb_000116_480 Hb_000116_480 Hb_000203_180--Hb_000116_480 Hb_000139_240 Hb_000139_240 Hb_000203_180--Hb_000139_240 Hb_001655_070 Hb_001655_070 Hb_000203_180--Hb_001655_070 Hb_006452_030 Hb_006452_030 Hb_000203_180--Hb_006452_030 Hb_011472_040 Hb_011472_040 Hb_000203_180--Hb_011472_040 Hb_004242_190 Hb_004242_190 Hb_028872_060--Hb_004242_190 Hb_004230_040 Hb_004230_040 Hb_028872_060--Hb_004230_040 Hb_028872_060--Hb_000640_300 Hb_000009_620 Hb_000009_620 Hb_028872_060--Hb_000009_620 Hb_028872_060--Hb_155123_010 Hb_026698_010 Hb_026698_010 Hb_004225_180--Hb_026698_010 Hb_010407_070 Hb_010407_070 Hb_004225_180--Hb_010407_070 Hb_006189_010 Hb_006189_010 Hb_004225_180--Hb_006189_010 Hb_004225_180--Hb_011472_040 Hb_007849_040 Hb_007849_040 Hb_004225_180--Hb_007849_040 Hb_003978_010 Hb_003978_010 Hb_004225_180--Hb_003978_010 Hb_000589_400 Hb_000589_400 Hb_000640_300--Hb_000589_400 Hb_000243_140 Hb_000243_140 Hb_000640_300--Hb_000243_140 Hb_007451_020 Hb_007451_020 Hb_000640_300--Hb_007451_020 Hb_000640_300--Hb_004230_040 Hb_000877_060 Hb_000877_060 Hb_012052_060--Hb_000877_060 Hb_004920_040 Hb_004920_040 Hb_012052_060--Hb_004920_040 Hb_003106_070 Hb_003106_070 Hb_012052_060--Hb_003106_070 Hb_004221_010 Hb_004221_010 Hb_012052_060--Hb_004221_010 Hb_012052_060--Hb_006189_010 Hb_084934_010 Hb_084934_010 Hb_012052_060--Hb_084934_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.2425 37.5042 1.22643 7.655 23.8181 56.7856
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
99.9068 36.6406 48.4432 91.8587 0

CAGE analysis